Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1466 ATGGCTTCATCCTCATCTTCATCAAAGAGACATCCCTTGTACCACGGAATCCGTTGCCGCGGAGGAAAGTGGGTCACTGAAATCCGTGAGCCACGTAAGACCAACCGCATATGGTTGGGAACGTTCCTCACTCCGGAGATGGCCGCCGCCGCCTACGACGTGGCGGCGTTAGCCCTCAAAGGCGGCGAAGCGGTTCTCAACTTCCCGGACTCAGTTGGCAGGTATCCAGTTCCCGCGTCAAAATCCCCTGAGGACATCCGCACCGCAGCCATTGCTGCAGCAGAACTCATGAAGCCTGAAGCCAGCCACAACAACGTTAATGCAGTAGCCCAGTCTGATAACACAGAGGGTTATGATTACGCTTACCATAATGTTGTTGGTCCTTCGTATGAAACTGAGTTTGTCGACGAGGAAGCCATATTCTCTATGCCGAGTTTGTTGGTCGACATGGCTGAGGGAATGCTGCTAACCCCTCCCAGAATGAGCTCGCCCTCTGATTACTGGACCGAAAATTCTGCTGGAGAAAATCTGTGGAACTTTTGA 543 0.5267 MASSSSSSKRHPLYHGIRCRGGKWVTEIREPRKTNRIWLGTFLTPEMAAAAYDVAALALKGGEAVLNFPDSVGRYPVPASKSPEDIRTAAIAAAELMKPEASHNNVNAVAQSDNTEGYDYAYHNVVGPSYETEFVDEEAIFSMPSLLVDMAEGMLLTPPRMSSPSDYWTENSAGENLWNF* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1466 180 ProSiteProfiles AP2/ERF domain profile. 13 69 IPR001471 GO:0003700|GO:0006355
Vra7g1466 180 Pfam AP2 domain 14 61 IPR001471 GO:0003700|GO:0006355
Vra7g1466 180 CDD AP2 12 71 IPR001471 GO:0003700|GO:0006355
Vra7g1466 180 PANTHER ETHYLENE RESPONSE FACTOR 1 180 - -
Vra7g1466 180 Gene3D AP2/ERF domain 13 70 IPR036955 GO:0003700|GO:0006355
Vra7g1466 180 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 180 - -
Vra7g1466 180 SUPERFAMILY DNA-binding domain 13 71 IPR016177 GO:0003677
Vra7g1466 180 SMART rav1_2 13 75 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1466 Vra-Chr7 31953430 31954087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1466 8 180 AP2-EREBP Transcription Factor Family AT5G52020 51.977 1.12e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra7g1466 AP2 2.3e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1466 - - gmx:100793589 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1466 7 31953430 31954087 Vra7g1466 7 31953430 31954087 ECH
Vra7g1466 7 31953430 31954087 Vra11g0313 11 2232612 2233378 PCT