Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1465 ATGAACGTTAATTCCACACAATCATTACCTCACTCCAACAACGCTTCCTACTTTTCCTCCTCCCCGGAAACAACCTCCTCTCTCAACGCCCTTCACTCCGACGACGAACTACATGCATTAGCGTCCGCGCGCCCCAAGAGACGTGCAGGCCGCCGAATCTTTAAGGAGACACGACACCCCGTCTACCGGGGGGTGCGACAGAGGAAGAACAACAAGTGGGTCTGCGAGGTGCGTGTCCCCAATGACAAATCCACAAGGATTTGGCTCGGAACGTACCCAACCGCTGAGATGGCAGCACGCGCGCACGACGTTGCCGCCCTCGCGCTCCGAGGAAAGTCCGCTTGTCTCAACTTCGCCGACTCGGCGTGGCGGCTGCCCTTGCCGGCGTCTACAAATGCGAAGGAGATACGGCGAGTGGCGGCGGAGGCTGTTGTTGCGATTGCTGCAGAAGACAGTTGCGTCGAACAATCAGAAAACGAGAATGTGAATGCCGTGGTTGACTGCAAAGTTAGCAGCTTTGGTGTCTGCACTGATGAAGATGGCAATAGTAGCAAAGTGCTGCGGGAGTTTGGTGATTTGGATGAGATAACAGTACCAGTTACATTAGGATTTGATGACATGCATGAGTGGCTTCAGAACTTGGCGGATGAGCCTCTGCGATCTCCTTCTTTTTTAACATATGTTAGGGACTGGACATGTCTTGAGGATGATGTTGAAGTTTCTTTGTGGAGCTTCTCCTTCTGA 744 0.5296 MNVNSTQSLPHSNNASYFSSSPETTSSLNALHSDDELHALASARPKRRAGRRIFKETRHPVYRGVRQRKNNKWVCEVRVPNDKSTRIWLGTYPTAEMAARAHDVAALALRGKSACLNFADSAWRLPLPASTNAKEIRRVAAEAVVAIAAEDSCVEQSENENVNAVVDCKVSSFGVCTDEDGNSSKVLREFGDLDEITVPVTLGFDDMHEWLQNLADEPLRSPSFLTYVRDWTCLEDDVEVSLWSFSF* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1465 247 MobiDBLite consensus disorder prediction 1 25 - -
Vra7g1465 247 SMART rav1_2 61 125 IPR001471 GO:0003700|GO:0006355
Vra7g1465 247 CDD AP2 62 121 IPR001471 GO:0003700|GO:0006355
Vra7g1465 247 SUPERFAMILY DNA-binding domain 61 121 IPR016177 GO:0003677
Vra7g1465 247 Gene3D AP2/ERF domain 61 120 IPR036955 GO:0003700|GO:0006355
Vra7g1465 247 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 6 246 IPR045277 GO:0003700
Vra7g1465 247 Pfam AP2 domain 60 111 IPR001471 GO:0003700|GO:0006355
Vra7g1465 247 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Vra7g1465 247 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Vra7g1465 247 ProSiteProfiles AP2/ERF domain profile. 61 119 IPR001471 GO:0003700|GO:0006355
Vra7g1465 247 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 6 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1465 Vra-Chr7 31931272 31932567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1465 31 247 AP2-EREBP Transcription Factor Family AT1G12610 46.930 1.06e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra7g1465 AP2 1.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1465 - - pvu:PHAVU_003G212800g 383.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1465 7 31931272 31932567 Vra11g0314 11 2243359 2244245 PCT