Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1460 ATGAGTGGAATGGCGTCCAATCAGGAGGAGCAAGACCAAGATGGAGGAACAACGGACCTCAGCACCAGCGACGTCGACGCAGACAAAGCCTTATCCAAAACCACCAACCTCAATGGACTTCACCAACACTTCCAAGACAAACCCATAGCCTTCCAAGTCTTGCCGCTCAAAAACGAGCCAACGGATTCCGACCCTGACCCGGACCCCAACGCGCCCAATCCTCCTCCACCACCGCCGACTATGCACCTTCCACTCAAATCGCCCAGGCGCTCCTCCACCAAGGACCGCCACACCAAAGTCGAAGGCCGAGGCCGCAGGATCCGAATACCCGCCACCTGCGCCGCCCGGATCTTCCAACTGACCCGAGAGCTGGGCCACAAATCCGACGGCGAAACCGTCCGGTGGCTCCTCGAGCACTCCGAGCAGGCCATCATAGAAGCCACCGGCACAGGCACCGTGCCAGCCATCGCGGTCTCTGTCGGCGGCGCGCTCAAAATCCCAACGACCTCGAGCGCCAACCAAAACAAGGGCGAAGAAGGCGCGTCTAACAAGAAACGGAAACGCCCTTCCAACAGCGAGTTCGTGGACATAAACGATACCGTTTCGCAGACGTCGGGTCTGGCCCCAGTTCAAGTACCTCAAGGACTGGTCCCGGTCTGGGCAGTTAGTAACCCCAGCATGGTGGTCCCCGCCAACACGTTCTGGATGATCCCGCAGGCCGCGACCACCAGGAACCCCTTGGGCGGAGTTACGGGCCCCTCCAGCCACCAGCCTCAGATATGGGCCTTATCTCCCTCCGTGTTCAACGTGGCGGCCAGGCCCATATCGCCTCTCGTGACAACAAGGAATATTCCAGAAGCTTGGTCCGTCATGGCGGCCTGCAGTAACGGTTCTAATTCAGCAGCGGTGAGTACGAGCAGTGTGGGGGCTAGGTCGTCTACCAATTCCAGCATGGCCCCTAGTGTTCCTTCGAGCGCCACCAAGACTCAGACGTTGAGGGATTTTTCCCTCCAAATTTACGACAAGCAAGAGTTGCAGTTCTTGGGCCGCTCTGGCCCAAACGCCAACCCATGA 1074 0.5903 MSGMASNQEEQDQDGGTTDLSTSDVDADKALSKTTNLNGLHQHFQDKPIAFQVLPLKNEPTDSDPDPDPNAPNPPPPPPTMHLPLKSPRRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHSEQAIIEATGTGTVPAIAVSVGGALKIPTTSSANQNKGEEGASNKKRKRPSNSEFVDINDTVSQTSGLAPVQVPQGLVPVWAVSNPSMVVPANTFWMIPQAATTRNPLGGVTGPSSHQPQIWALSPSVFNVAARPISPLVTTRNIPEAWSVMAACSNGSNSAAVSTSSVGARSSTNSSMAPSVPSSATKTQTLRDFSLQIYDKQELQFLGRSGPNANP* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1460 357 MobiDBLite consensus disorder prediction 301 329 - -
Vra7g1460 357 MobiDBLite consensus disorder prediction 179 193 - -
Vra7g1460 357 ProSiteProfiles TCP domain profile. 93 147 IPR017887 -
Vra7g1460 357 MobiDBLite consensus disorder prediction 65 84 - -
Vra7g1460 357 MobiDBLite consensus disorder prediction 1 42 - -
Vra7g1460 357 MobiDBLite consensus disorder prediction 1 106 - -
Vra7g1460 357 Pfam TCP family transcription factor 92 187 IPR017887 -
Vra7g1460 357 MobiDBLite consensus disorder prediction 88 106 - -
Vra7g1460 357 PANTHER TRANSCRIPTION FACTOR TCP9-LIKE 15 354 - -
Vra7g1460 357 MobiDBLite consensus disorder prediction 167 194 - -
Vra7g1460 357 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 15 354 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1460 Vra-Chr7 31889164 31890596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1460 4 348 TCP Transcription Factor Family AT2G45680 43.570 3.99e-74 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vra7g1460 TCP 1.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1460 - - gmx:100797827 456.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1460 7 31889164 31890596 Vra7g1460 7 31889164 31890596 ECH