Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1458 ATGCAAGAAGCTGGGCTGGCAATGAATATGCTCAGCGCAGAAGTCTCCGCCGCCGCCGCCGACCACCACCACCGTCAACTGAAGGCGGACATAGCCACCCATCCACTTTACGAACAGCTTCTCGCTGCACACGTCTCATGCCTCCGCGTGGCTACACCGATCGACCAGTTGCCACTGATCGACGCTCAGTTATCACACTTCAACAATCTCCTCCGCTCTTACGCCTCACACCATTCCCATTCCCATTCCCATGATCGACAAGAGCTCGACAACTTCATGACACAGTATTTGATCGTGTTATGTGCGTTAAAAGAGCAGCTTCAGCAACATGTTCGGGTGCATGCCGTGGAGGCTGTGATGGCCTGCCGTGATATTGAAAGCACCTTGCAAGCTCTGACAGGAGTGAGCCTGGGAGAAGGATCGGGTGCAACAATGTCAGATGACGAAGAGGATTTTCAAATGGATGGGTCTTTAGATCAGTCTAGCGCTGAGGGGCACGACATGATGGGATTTGGTCCATTGCTTCCTACAGAATCTGAAAGGTCCCTCATGGAAAGAGTTCGTCAGGAGCTCAAAATTGAGCTCAAGCAGGGTTTCAAGTCAAGAATCGAAGATGTTAGGGAGGAAATATTAAGGAAAAGGAGAGCCGGGAAATTGCCTGGGGACACAACATCAGTGTTAAAGGCATGGTGGCAGCAACACGCTAAATGGCCCTACCCAACTGAAGATGACAAGGCAAAACTTGTGGAAGAGACAGGGTTGCAGCTGAAGCAAATCAATAATTGGTTCATCAACCAAAGGAAACGCAACTGGCACAGCAACTCTCAATCGGTCACCTCTCTCAAGTCCAAGCGCAAGAGGGAGTATTCCCACTAA 876 0.5046 MQEAGLAMNMLSAEVSAAAADHHHRQLKADIATHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLSHFNNLLRSYASHHSHSHSHDRQELDNFMTQYLIVLCALKEQLQQHVRVHAVEAVMACRDIESTLQALTGVSLGEGSGATMSDDEEDFQMDGSLDQSSAEGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKAWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKREYSH* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1458 291 ProSiteProfiles ELK domain profile. 190 210 IPR005539 GO:0003677
Vra7g1458 291 Gene3D - 209 284 - -
Vra7g1458 291 Pfam KNOX2 domain 83 133 IPR005541 GO:0003677|GO:0005634
Vra7g1458 291 Pfam KNOX1 domain 27 67 IPR005540 GO:0003677|GO:0005634
Vra7g1458 291 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 15 287 - -
Vra7g1458 291 SMART KNOX1_2 25 69 IPR005540 GO:0003677|GO:0005634
Vra7g1458 291 Pfam Homeobox KN domain 230 269 IPR008422 GO:0003677|GO:0006355
Vra7g1458 291 SMART KNOX2_2 79 134 IPR005541 GO:0003677|GO:0005634
Vra7g1458 291 SUPERFAMILY Homeodomain-like 212 277 IPR009057 -
Vra7g1458 291 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 15 287 - -
Vra7g1458 291 SMART HOX_1 212 277 IPR001356 GO:0003677
Vra7g1458 291 ProSiteProfiles 'Homeobox' domain profile. 210 273 IPR001356 GO:0003677
Vra7g1458 291 CDD homeodomain 213 274 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1458 Vra-Chr7 31859903 31865797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1458 1 286 Homeobox Transcription Factor Family AT1G62990 75.601 2.86e-162 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vra7g1458 KNOX2 9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1458 - - gmx:100803130 521.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1458 7 31859903 31865797 Vra7g1458 7 31859903 31865797 ECH
Vra7g1458 7 31859903 31865797 Vra11g1164 11 11826932 11836291 PCT