Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1457 ATGGTGAGGGGGAAAACTCAGATGAAGCGCATCGAAAACGAAACGAGTAGGCAAGTCACCTTCTCCAAGAGAAGGAACGGCTTGCTCAAAAAGGCCTTTGAGCTTTCGGTGCTGTGCGATGCTGAAGTCGCGCTCATCATCTTCTCCACCAGAGGGAGGCTTTACGAGTTCTCCAGTTCAACTTCAAGTATAAACAAAACAGTTGAACGCTATCAAAAGAAAATCAAGGACTTTGGTGACAGCCACAAAGGAATCCATGAAAATACACAGATTCTGAAGGACGGTGGTATGAGCATGACAGAGACGATCGAGCACCTAGAAAATTCCAGAAGGAAGCTTTTGGGAGATGAATTGGATACATGCAGTCTTGACGAGTTACGACAGCTAGAGAACCAGCTCGAACGCAGCTTGGAAAAAATTAGGGCAAGAAAGAATCAAATGTTCACGGAGCAAATTGAGAAGTTAAAAGAAGAGGAGAAGTGCTTACTCCAAGTAAATAAACGCTTACGCGAGCAGTACCTGATTGAACGAGGGCGTTATTTGAGTGATGAGGATTTGGAAGTGGTGAGAGAAAAGAAGGAAGAAGAGGTGGAAACGGAGTTATTCATAGGAAGACGTTAA 621 0.4428 MVRGKTQMKRIENETSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTRGRLYEFSSSTSSINKTVERYQKKIKDFGDSHKGIHENTQILKDGGMSMTETIEHLENSRRKLLGDELDTCSLDELRQLENQLERSLEKIRARKNQMFTEQIEKLKEEEKCLLQVNKRLREQYLIERGRYLSDEDLEVVREKKEEEVETELFIGRR* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1457 206 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Vra7g1457 206 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Vra7g1457 206 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vra7g1457 206 PANTHER MADS-BOX PROTEIN SOC1 1 205 - -
Vra7g1457 206 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra7g1457 206 Coils Coil 123 150 - -
Vra7g1457 206 Coils Coil 152 172 - -
Vra7g1457 206 Pfam K-box region 93 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra7g1457 206 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vra7g1457 206 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
Vra7g1457 206 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vra7g1457 206 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vra7g1457 206 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vra7g1457 206 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vra7g1457 206 PANTHER MADS BOX PROTEIN 1 205 - -
Vra7g1457 206 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1457 Vra-Chr7 31828214 31842857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1457 1 204 MADS-box Gene Family AT4G22950 58.654 1.49e-73 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vra7g1457 K-box 3.9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1457 - - gmx:100805260 304.679