Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1455 ATGGCTGTCTCTCTTGAACATCGTAGGTTGTTGTTGATGTTGTTTTCATGGATGTTGATAATGACGGGAAAGCCAGCAACAGTAGCGGGTTTATTTCAGCCCAGTGTGTGGACACAAGCCCATGCGACATTTTATGGTGACGAGAGTGCTTCTGCCACCATGGGAGGAGCGTGTGGATATGGAAATTTGTTCATAAACGGTTACGGGAAAGACACGGCAGCTCTGAGCTCTACATTGTTCAACGATGGATACGCATGTGGGACTTGTTACGAGATAAAGTGTGTCCAATCCAGTGCATGCTTCTCGAATGTGGCTTACACCACAGTGACTGCCACCAATATCTGCCCTCCTAATTGGGCCGAGGCCTCTGACAAGGGAGGGTGGTGCAACCCACCTCGTGCACATTTTGACATGTCCAAGCCCGCTTTCATGAAAATTGCAGAGTGGAAAGCTGGAATCGTTCCTGTTATGTACCGCAGAGTGGGTTGCGTGAGGAGTGGGGGATTGAGATTCTCTTTCCAGGGAAATGGTTATTGGCTACTGGTGTATGTGATGAATGTGGGAGGAGGAGGAGACATTGCAAACATGTGGGTGAAAGGAAGTAGAACTGGGTGGATCAGCATGAGCCACAATTGGGGAGCTTCTTACCAAGCATTTGCAACATTGAGTGGCCAATCTCTTTCGTTTAAGGCAACCTCTTACACCACCAAAGAGACCATAATAGCTTGGAATGTTGCTCCCACCAACTGGGGCGTAGGATTAACGTATTCCTCCAACGTCAATTTCAGCTTACGGATGCGTGAATCGTAA 810 0.4815 MAVSLEHRRLLLMLFSWMLIMTGKPATVAGLFQPSVWTQAHATFYGDESASATMGGACGYGNLFINGYGKDTAALSSTLFNDGYACGTCYEIKCVQSSACFSNVAYTTVTATNICPPNWAEASDKGGWCNPPRAHFDMSKPAFMKIAEWKAGIVPVMYRRVGCVRSGGLRFSFQGNGYWLLVYVMNVGGGGDIANMWVKGSRTGWISMSHNWGASYQAFATLSGQSLSFKATSYTTKETIIAWNVAPTNWGVGLTYSSNVNFSLRMRES* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1455 269 Pfam Expansin C-terminal domain 170 247 IPR007117 -
Vra7g1455 269 PRINTS Expansin/Lol pI family signature 36 51 IPR007118 GO:0005576
Vra7g1455 269 PRINTS Expansin/Lol pI family signature 54 72 IPR007118 GO:0005576
Vra7g1455 269 PRINTS Expansin/Lol pI family signature 76 94 IPR007118 GO:0005576
Vra7g1455 269 PRINTS Expansin/Lol pI family signature 151 167 IPR007118 GO:0005576
Vra7g1455 269 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576
Vra7g1455 269 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576
Vra7g1455 269 SUPERFAMILY Barwin-like endoglucanases 36 186 IPR036908 -
Vra7g1455 269 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 258 IPR007117 -
Vra7g1455 269 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 55 168 IPR007112 -
Vra7g1455 269 Gene3D - 24 163 IPR036908 -
Vra7g1455 269 SUPERFAMILY PHL pollen allergen 165 258 IPR036749 -
Vra7g1455 269 Pfam Lytic transglycolase 72 158 IPR009009 -
Vra7g1455 269 SMART dpbb_1 72 158 IPR007112 -
Vra7g1455 269 PRINTS Expansin signature 67 81 IPR002963 GO:0009664
Vra7g1455 269 PRINTS Expansin signature 107 117 IPR002963 GO:0009664
Vra7g1455 269 PRINTS Expansin signature 126 143 IPR002963 GO:0009664
Vra7g1455 269 PRINTS Expansin signature 143 156 IPR002963 GO:0009664
Vra7g1455 269 PRINTS Expansin signature 167 179 IPR002963 GO:0009664
Vra7g1455 269 PRINTS Expansin signature 179 200 IPR002963 GO:0009664
Vra7g1455 269 PRINTS Expansin signature 214 235 IPR002963 GO:0009664
Vra7g1455 269 PANTHER EXPANSIN 2 262 - -
Vra7g1455 269 Gene3D - 169 263 IPR036749 -
Vra7g1455 269 PANTHER EXPANSIN-A15 2 262 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1455 Vra-Chr7 31816387 31817885 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1455 28 262 Expansin Gene Family AT1G12560 70.213 6.60e-124 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1455 - - gmx:100781459 486.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1455 7 31816387 31817885 Vra7g1455 7 31816387 31817885 ECH
Vra7g1455 7 31816387 31817885 Vra11g0323 11 2332361 2333657 PCT