Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1451 ATGACATCCGAGAGAATTGGCGAATATGCCAATGACTTAACTCTTTATAAAGGAAAATTGTTTAACAGCGACACCTATGCTTACAATTTTTATTGTTTATTTGCAAAGACTTATGGTTTTTCAGTTAGACGTGGACATAGTTATAGAAGGAACAAGAATAACATTGAAGAAATATATAAAAGAAAGTTTATTTGTCACCGAGCAGGTGTTGCTAAACAAAATAAAATTAGTGAAGTAGAAAAACAAAGGAGACGAAAAAGTTCCAGGTGTAATTGTAGTGCAAAATTGTTGATATCTAAAAGAACATTTGGCTTCGAGGAAAAATGGATGGTTACATGTTTCGAAAACTCTCATAATCATGTTTTATTAGATGAGAAAGAAATTCGATTTCTTCCAGCTTATCGTGATATCCCTATTAACGATCAAGCTCGTATATTATTATTGTCAAAAGTTGGTTGCTCGGTAAGTCTCATTATGAGAGTGCTTGAAGCGGAGAAAGGGATAGAGGCAGGACATCTACCATTTTTGGACAAAGATATTAGAAATTTTATTAAATCTCAAAGTAGCATTGATAAAGATAATGACGCTTCAGATGTTCTTAAATTATGCAAAGGTTTGAAAGACAAAGATTATGCTTTCCAATATGATTTTACATTGGATGAAAATAACAAGTCGGAACATATTATTTGGGTATTTGGTGATTCGATACGAGCATATGAAGCTTTTGGGGATGTGGTTGTCTTTGATACTACGTATCGGATTAATCGTTATGATATGCCTCTTGGATTATGGGTTGGAGTTGATAATCATGGAAATTCCATTTTTTTTGGTTGTAGTTTTGTACGCTTTGTGAAAGGAAAATGTCCACAAACAATTCTAACTGATCAAGATCATGCACTTAAAGAAGCTGTTTCAACAGAATTGCCAAATACAAAGCATGTCTTTTGCATATGGCATATTGCGACAAAGTTGCCAACTTGGTTTTCTTTCCTTTTGGGTACAGAGTATGATGACTTCAAAACTGAGTTCTATAGGCTATATAATTTAGAATGTGAAAGTGATTTTGAACAACAATGGGATTTCATGGTTGAACGCTTTCATGTAACCTATTTGAAAGAATTCTTTTTCGCTGGGATGACAACAACCGGACGTTCAGAATCTATAAATTCATATATTAAAAGATTCTTGGATGTTGGAGTTGCTGTGAACATTAGAAATCAAGCTGGAGAAGAGGCAAGAATGCGTCAAAAGTATCATAATCCTCTAATGAAAACGATTTTTCCGATTGAGGAACATGCTGCATCCATACTCACACTATATGCCTTTGAGTTGCTTCAACATGAGATTGAGTTATCTGCAAAATATGCAGCAACTGCGATTGACAATGACTCTTACTCGGTGCGACATCATACCAAACTTGATGGAGGTCGTTCTGTAACTTGGATAAAGGAAAAAAATTCAATTTATTGTTCTTGTAAACAATTTGAATTTTCTGGAATACTATGTAGACATGCTATTCGAGTGTTGTTGAAGAATGACTATTTTAGCATTCCAAAAGAATATCTTCCTTCTCGATGGAGAAGAGAAAGCTCATTGATCCCACAATCAAGACACATAATCAACTATAATGATAACTCCTTTGTTGAGTTTCGATCACTTGTGCAATGTTTAGAGGTTGAATCTTTAAAGACCAAAGATCGAGTTGAAGTAGCTACTAAAGAGTTAAAGAAAGTCATTCACTATTTAAAAGGATCAAGGGCAAAAGGAGGAGTTGAAGTTGCAAAGAAGTCTCGTCATTGTCATTATCCTAATTGTGGTGGAACCGATCATGACTCACGAAATTGTCCAATCAAAAGGAAGAAAGACTCACTATTAGCTTCTCAATCATCTCCTAATAAGTAA 1902 0.3438 MTSERIGEYANDLTLYKGKLFNSDTYAYNFYCLFAKTYGFSVRRGHSYRRNKNNIEEIYKRKFICHRAGVAKQNKISEVEKQRRRKSSRCNCSAKLLISKRTFGFEEKWMVTCFENSHNHVLLDEKEIRFLPAYRDIPINDQARILLLSKVGCSVSLIMRVLEAEKGIEAGHLPFLDKDIRNFIKSQSSIDKDNDASDVLKLCKGLKDKDYAFQYDFTLDENNKSEHIIWVFGDSIRAYEAFGDVVVFDTTYRINRYDMPLGLWVGVDNHGNSIFFGCSFVRFVKGKCPQTILTDQDHALKEAVSTELPNTKHVFCIWHIATKLPTWFSFLLGTEYDDFKTEFYRLYNLECESDFEQQWDFMVERFHVTYLKEFFFAGMTTTGRSESINSYIKRFLDVGVAVNIRNQAGEEARMRQKYHNPLMKTIFPIEEHAASILTLYAFELLQHEIELSAKYAATAIDNDSYSVRHHTKLDGGRSVTWIKEKNSIYCSCKQFEFSGILCRHAIRVLLKNDYFSIPKEYLPSRWRRESSLIPQSRHIINYNDNSFVEFRSLVQCLEVESLKTKDRVEVATKELKKVIHYLKGSRAKGGVEVAKKSRHCHYPNCGGTDHDSRNCPIKRKKDSLLASQSSPNK* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1451 633 Pfam FAR1 DNA-binding domain 29 123 IPR004330 -
Vra7g1451 633 Pfam MULE transposase domain 286 322 IPR018289 -
Vra7g1451 633 Pfam SWIM zinc finger 483 511 IPR007527 GO:0008270
Vra7g1451 633 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 14 587 - -
Vra7g1451 633 ProSiteProfiles Zinc finger SWIM-type profile. 465 513 IPR007527 GO:0008270
Vra7g1451 633 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 14 587 IPR031052 GO:0006355
Vra7g1451 633 SMART 26again6 488 515 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1451 Vra-Chr7 31793900 31796341 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vra7g1451 FAR1 5.2e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1451 - - var:108339217 1186.02