Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1448 ATGGGGAGGCAACCCTGCTGTGACAAACTTGGGGTGAAGAAAGGTCCATGGACTGCAGAGGAAGACAAGAAGCTCATCAACTTCATTTTCACCAATGGCCAGTGTTGTTGGCGTGCTGTGCCAAAGCTTGCTGGCCTTAGGCGTTGTGGCAAGAGTTGTCGCCTTCGTTGGACTAATTATCTTCGCCCAGACTTGAAGAGAGGACTCCTCACACAAGCAGAGGAGCAACTTGTTATTGATCTCCATGCCCGTCTTGGCAACAGGTGGTCCAAAATTGCTGCCAGGTTACCCGGAAGAACAGACAACGAGATTAAAAACCATTGGAACACACATATCAAGAAAAAACTCCTGAAAATGGGTATTGATCCCGTTACTCATGAACCTCTCATTAAACAAGCAGCATCTCAGGATAGTTCACCCTCCCCCTCAGAGCATTTGCCACAGCCTGAGAATAACCTCGATCAGGTGAAAGAAACTGATGTGGTTCTCAACTCAGAGGAGAATTCAAGTTCATCCCAAGCTGAAAATTCATCTGGGGATGATTCACTTTTGCTAGATAGTATTTGCAGTGACGATTCTCTGTTAAACACCCTGTGGCTGGATGAAACTCCTCTGATGGAAGCATTATGGGACACAACACCCAAACTAGAGAATAATACTAATAGTAACACGGGTTTGGTACCATCGTGGGAGGACAACTGTGCTTGGTTATTGGACTGTCAGGACTTCGGTATTCATGATTTTGGGTTTAACTGTTTCAACGAGATAGAGTCAAATGCACTGCATACCATAGAAATGAAGGACGAGGAGCATTAA 816 0.4534 MGRQPCCDKLGVKKGPWTAEEDKKLINFIFTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTQAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLIKQAASQDSSPSPSEHLPQPENNLDQVKETDVVLNSEENSSSSQAENSSGDDSLLLDSICSDDSLLNTLWLDETPLMEALWDTTPKLENNTNSNTGLVPSWEDNCAWLLDCQDFGIHDFGFNCFNEIESNALHTIEMKDEEH* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1448 271 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 256 - -
Vra7g1448 271 SMART sant 13 63 IPR001005 -
Vra7g1448 271 SMART sant 66 114 IPR001005 -
Vra7g1448 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vra7g1448 271 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vra7g1448 271 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vra7g1448 271 CDD SANT 16 61 IPR001005 -
Vra7g1448 271 Gene3D - 70 144 - -
Vra7g1448 271 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vra7g1448 271 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vra7g1448 271 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Vra7g1448 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vra7g1448 271 MobiDBLite consensus disorder prediction 132 154 - -
Vra7g1448 271 CDD SANT 71 112 IPR001005 -
Vra7g1448 271 Gene3D - 12 67 - -
Vra7g1448 271 MobiDBLite consensus disorder prediction 162 181 - -
Vra7g1448 271 PANTHER PROTEIN ODORANT1 2 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1448 Vra-Chr7 31741445 31745297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1448 1 250 MYB Transcription Factor Family AT4G22680 60.150 4.22e-102 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra7g1448 Myb_DNA-binding 1.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1448 K09422 - gmx:100786965 469.544