Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1428 ATGGAGTCAAGTGGCGGTGTCAGCGGCGGCGTTACGGTCGTGGGATCGGATGCTCCGTCGGATTACCATGTAGCTCCGAGGACCGACAACCCAACTCCCGCAAGCGGATCCACCACGCAAATTCCGGCGACGGCGGGGAGTGCTCCTCCGGTACAACCACCGCACACGGCAGCGATGGAAGCGTCGCCGGCGACGATGCCGGCTAAAAAGAAGAGAGGGCGGCCGAGAAAGTACGCACCGGACGGCTCGGTGACCATGGCGCTGTCTCCGAAGCCGATATCTTCGTCCGCTCCGTTGCCGCCGGTGATCGATTTCTCGTCGGAGAAGCGCGGAAAAATAAAACCAACGAGTTCCGTGAGCAAAGCGAAATTTGAGTTGGAGAATTTAGGTGAATGGGTTGCATGCTCAGTTGGTGCTAATTTCACTCCCCATATCATCACTGTTAATTCTGGGGAGGATGTGACAATGAAAGTAATATCATTTTCTCAGCAAGGGCCTCGAGCTATATGCATTCTTTCAGCTAATGGTGTCATATCAAGTGTCACACTTCGTCAGCCCGATTCTTCTGGAGGCACATTGACATATGAGGGACGGTTTGAAATTCTGTCTTTATCTGGCTCATTCATGCCCAATGAAAGTGGAGGAACACGAAGCAGATCCGGTGGCATGAGTGTATCTTTGGCAAGCCCTGATGGACGTGTTGTAGGTGGAGGAGTAGCTGGTTTGTTGGTGGCTGCAAGTCCTGTGCAGGTAGTGGTAGGAAGTTTTCTGGCAGGAAACCAACATGAGCAGAAGCCAAGAAAACAGAAACATGAAGTTATATCAAGCGTGACAGCAGCAGCAGTTGTTCCCATCTCCACCCTTGATCCAATACCAATTCTATCATCAGCAACTTCCATCCGCGGAGAAAGTTGGTCTGCTATGCCAGCAGAGGCCAAGAATAAGCCAACTGACATTAACGTGTCGCTTCCAGCAGGGTAA 981 0.5189 MESSGGVSGGVTVVGSDAPSDYHVAPRTDNPTPASGSTTQIPATAGSAPPVQPPHTAAMEASPATMPAKKKRGRPRKYAPDGSVTMALSPKPISSSAPLPPVIDFSSEKRGKIKPTSSVSKAKFELENLGEWVACSVGANFTPHIITVNSGEDVTMKVISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPNESGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKPRKQKHEVISSVTAAAVVPISTLDPIPILSSATSIRGESWSAMPAEAKNKPTDINVSLPAG* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1428 326 ProSiteProfiles PPC domain profile profile. 138 277 IPR005175 -
Vra7g1428 326 MobiDBLite consensus disorder prediction 1 83 - -
Vra7g1428 326 Pfam Plants and Prokaryotes Conserved (PCC) domain 143 256 IPR005175 -
Vra7g1428 326 MobiDBLite consensus disorder prediction 30 46 - -
Vra7g1428 326 MobiDBLite consensus disorder prediction 306 326 - -
Vra7g1428 326 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 9 324 - -
Vra7g1428 326 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 9 324 IPR039605 GO:0003680
Vra7g1428 326 CDD DUF296 142 233 IPR005175 -
Vra7g1428 326 Gene3D - 143 275 - -
Vra7g1428 326 SUPERFAMILY AF0104/ALDC/Ptd012-like 140 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1428 Vra-Chr7 31529896 31534650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1428 1 323 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 62.817 8.63e-131 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1428 - - gmx:100794202 573.163