Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1418 ATGAAATATCAGAAAGACTATAATAAGGAATCAATTAAGAAGCTAGAAGAGAAGGTGATGGAGAATAAGAAAAAGTACGAGGAATTTTGTATGACATCTACTGCAGAGATGGCCATTGTGCCTGTTGAGGAAGTAGTCATTTTGAAAAGTTTACTTCAGAAAGAGACTCTTATCAGAAATGCTACAGAAGGGGAGCTAAATCGTCTGAAAAGTCAAATGAAAGAACTGAAAGATCGGGAGGCATCAAGAGAGTCACATATCTTAAAAATTCGTAAGATGTTGGAAGATGAAGCACACCAGAAGGAGAATCTCAAAAGAGAAATAGCCAGATTGCAAAGTCAACTGCTGCAATTAGGTTTTAATGTTGGAAAAAAAACACAAAAAATTCTTCGAGTTGGATCTGAGAAAGTTGCTGGTGGTTTAGATTATTCTCCCTCTTTCCTAGTTAAACATCTACAGCAAGCTTCAGCAAACGGAGAGGAGGCCTCAGCTGCCAAGCTCTTTGAACAAGGTGGATTGCAGAAGATTCTGTCATTGCTTGAAGCAGAAGATGCTGATGTACAAATCCATGCCCTGAAAATAATAGCTAATTTAGCTTGTGAAGAAAGAAACCAGAAGAAGATTGTAGAAGCAGGTGTACTTACGCCCTTGCTTTCACTCCTTAAGAACTCAAAAGATGAAACCACACATAGAGTTGCAGCAAGCGCCATTGCCAATTTGGCAATGAATGAAACCAATCAAGATCTCATTGCGGCTCAAGGAGGCATTAGTTTACTGTCAATGGTAGCAGCCAATACTGAAGATCCTCAGACCCTTCGAATGGTTGCTGGAGCATTTGCTAATCTTTTTGGAAATGATAAACTACAAATAAAGATAAGGGATGAAGGTGGTCTCAAGGCACTATTGGGAATGGTCAGATGCAGACATCCTGATGTACACACCCAGGTTGCCCGTGCAATAGCCAACTTTGCAAAATGTGAATCTAAAGCATCTACTCAAGGAACAAAGGTTGAAAGGTCTTTACTTATAGTGGACGATTTGCTTCCGTGGATTGTGCAAAACGCAAATAATGAAGTCTCGTTAGTTAGGCGTCATATTGAGATTGCTCTCTGCCACTTAGCAAAATTTGAAGCAAATGCAATAGATATGATCAGTGGAGGTGCAATGGGAGAGTTGGTTCGAGTCTCAAGAGATTCTTCAAGAGAAGATATAAGGATTCTTGCACGTGAAACACTGATCTCCAACCCTGCTTTCCATGCTGAAATCAGGAATTCGGGATTGAATATGGTTGAATAA 1296 0.3989 MKYQKDYNKESIKKLEEKVMENKKKYEEFCMTSTAEMAIVPVEEVVILKSLLQKETLIRNATEGELNRLKSQMKELKDREASRESHILKIRKMLEDEAHQKENLKREIARLQSQLLQLGFNVGKKTQKILRVGSEKVAGGLDYSPSFLVKHLQQASANGEEASAAKLFEQGGLQKILSLLEAEDADVQIHALKIIANLACEERNQKKIVEAGVLTPLLSLLKNSKDETTHRVAASAIANLAMNETNQDLIAAQGGISLLSMVAANTEDPQTLRMVAGAFANLFGNDKLQIKIRDEGGLKALLGMVRCRHPDVHTQVARAIANFAKCESKASTQGTKVERSLLIVDDLLPWIVQNANNEVSLVRRHIEIALCHLAKFEANAIDMISGGAMGELVRVSRDSSREDIRILARETLISNPAFHAEIRNSGLNMVE* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1418 431 SUPERFAMILY ARM repeat 158 412 IPR016024 -
Vra7g1418 431 Coils Coil 59 121 - -
Vra7g1418 431 PANTHER CENTROMERE PROTEIN E 14 424 - -
Vra7g1418 431 Gene3D - 14 414 IPR011989 -
Vra7g1418 431 PANTHER KINESIN-LIKE PROTEIN 14 424 - -
Vra7g1418 431 SMART arm_5 285 325 IPR000225 GO:0005515
Vra7g1418 431 SMART arm_5 243 284 IPR000225 GO:0005515
Vra7g1418 431 SMART arm_5 201 242 IPR000225 GO:0005515
Vra7g1418 431 SMART arm_5 159 200 IPR000225 GO:0005515
Vra7g1418 431 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 212 255 IPR000225 GO:0005515
Vra7g1418 431 Pfam Armadillo/beta-catenin-like repeat 203 241 IPR000225 GO:0005515
Vra7g1418 431 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 171 213 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1418 Vra-Chr7 31421802 31426264 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1418 160 305 U-box Gene Family AT5G40140 28.571 9.90e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1418 - - vra:106766300 823.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1418 7 31421802 31426264 Vra7g1418 7 31421802 31426264 ECH