Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1417 ATGGGTTCTCAATCTAACAATGGCATCAGCTACCCCACTTCAGAGGCCAATCTCTGCGCCAACAACTGCGGTTTCTTCGGCACTCCTGATAAAGGAAACTTCTGTTCCAAATGCTACAAGCAACTTTGTCTCCAGGTGCAGCCTTCTGTGATAGACTCTCTCTTATGTCCCTCCGCGCCGCAAGCGCTTCTTGACGAGGTAAAGCCATCCTCTTCGGTCGAGCAGTCGCCGCCGTGCGCGGCTGGGCCTTCCAAACCCAAGAATCGATGCGGGCATTGTAACAGAAAAGTGGGTTTAACCGGGTTCCTGTGCAAGTGTGGGACCATCTTCTGCGGGGTGCACCGTTACCCGGAGAAGCACGAGTGTACCTATGACTTCAAGGCTGCAGGGCGTGAAACGATTTCTAAGGAAAATCCTACTATAAAGGGTGACAAGGTGCAAAGGTTTTAG 450 0.52 MGSQSNNGISYPTSEANLCANNCGFFGTPDKGNFCSKCYKQLCLQVQPSVIDSLLCPSAPQALLDEVKPSSSVEQSPPCAAGPSKPKNRCGHCNRKVGLTGFLCKCGTIFCGVHRYPEKHECTYDFKAAGRETISKENPTIKGDKVQRF* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1417 149 SMART AN1_Zf_4 90 127 IPR000058 GO:0008270
Vra7g1417 149 Pfam AN1-like Zinc finger 90 126 IPR000058 GO:0008270
Vra7g1417 149 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 149 - -
Vra7g1417 149 Pfam A20-like zinc finger 18 40 IPR002653 GO:0003677|GO:0008270
Vra7g1417 149 Gene3D - 77 136 IPR035896 -
Vra7g1417 149 MobiDBLite consensus disorder prediction 68 87 - -
Vra7g1417 149 ProSiteProfiles Zinc finger AN1-type profile. 84 130 IPR000058 GO:0008270
Vra7g1417 149 SMART A20_3 16 40 IPR002653 GO:0003677|GO:0008270
Vra7g1417 149 ProSiteProfiles Zinc finger A20-type profile. 13 47 IPR002653 GO:0003677|GO:0008270
Vra7g1417 149 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 1 1 149 - -
Vra7g1417 149 SUPERFAMILY AN1-like Zinc finger 81 144 IPR035896 -
Vra7g1417 149 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 18 49 - -
Vra7g1417 149 Gene3D - 3 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1417 Vra-Chr7 31416004 31416453 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1417 13 149 C2H2 Transcription Factor Family AT3G52800 40.741 1.54e-32 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1417 - - vun:114175511 258.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1417 7 31416004 31416453 Vra7g1417 7 31416004 31416453 ECH