Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1406 ATGTCATCCTCTTCCACCACAATATCACTGGACCACCTCCCTCCTTCCGAACAGCTTTGTTATGTTCACTGCAATATTTGTGACACCGTCCTTGCTGTAAGTGTTCCCTGCACAAGCTTGTTCAAGACAGTTACTGTCCGATGCGGCCATTGCACTAACCTTCTGCCAGTGAACATGCGCGGCCTGCTTGTGCCATCTCCTACTCAATTTCATTTGGGTCACTCTTTCTTCTCCCCATCCCATAACCTTTTGGAGGAGATACCAAACCCATCTCCAAATTTTCTTATGAACCAAGCAAATTTAAGTGCTTCAAATGAGTTCTCTATGCCTGCCAGGACTGCAGCTGATGAGCTTCCACGGCCACCGATCATAAACAGACCTCCTGAGAAGAGACAGAGAGTCCCCTCCGCGTACAATCGCTTTATCAAGGACGAGATCCAACGCATCAAGTCTGTCAATCCCGATATAACTCACAGGGAAGCCTTCAGTGCAGCTGCCAAGAATTGGGCCCACTTCCCACACATCCACTTTGGTCTCATGCCTGATCAGACTGTGAAGAAGACAAATGTGTGCCAGCAGGAAGGAGAAGAGGTTCTCATGAAAGATGGGTTTTATGCTTCAGCTAATGTTGGTGTCTCACCCTACTAA 648 0.4784 MSSSSTTISLDHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLVPSPTQFHLGHSFFSPSHNLLEEIPNPSPNFLMNQANLSASNEFSMPARTAADELPRPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNVCQQEGEEVLMKDGFYASANVGVSPY* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1406 215 Gene3D High mobility group box domain 124 187 IPR036910 -
Vra7g1406 215 PANTHER PROTEIN YABBY 4 1 213 - -
Vra7g1406 215 SUPERFAMILY HMG-box 123 172 IPR036910 -
Vra7g1406 215 Pfam YABBY protein 15 179 IPR006780 GO:0007275
Vra7g1406 215 PANTHER PROTEIN YABBY 6-RELATED 1 213 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1406 Vra-Chr7 31248840 31251964 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1406 26 213 C2C2-YABBY Transcription Factor Family AT4G00180 59.809 2.95e-63 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vra7g1406 YABBY 1.4e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1406 K25796 - gmx:100798441 435.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1406 7 31248840 31251964 Vra7g1406 7 31248840 31251964 ECH