Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1402 ATGGATTTGAAGTCCTCTCATGTTTCTCCTGTTCTCACTGACCCTGTTCCCGTCAATAAGTCAAGGCTTGGAATACATTCTAGTTTGCTGGCTTATTCCCAGCAAGATTCACCAGTCTCTCCGGGGAAGTACTCAAGAAGCAATTCAAGGAAAAGTACAGGGAGTGTCGATGATGTGAGGTCCAATGGTTGGTTGGATGCCATGAAGGCTTCTTCCCCTCCAAGGAAGAAGCTACTTAAAGGGTCCAGTTTTCAGATTGCTTCAATTGACTTTGAGATTGAAGATTATTGTACATGGATGCTTGAATATCCTTCAGCACTAGACTCTTTTGAGAAAATCGTTGACCTTGCTCAGAATAAGAAGATTGCTATGTTTCTAGACTATGACGGCACACTTTCACCGATTGTAGATGATCCGGATTGTGCCTTTATGTCCGAATCTATGCGAACAACTGTGAGAAGTGTGGCAACATATTTCCCCACAGCAATCATCAGTGGAAGAAGCCGTGACAAGGTTTTTGATCTTGTTAAACTAACAGAACTGTACTACGCTGGTAGTCATGGGATGGACATTATTGGCCCTGTCAGTGAGACTTTGTCCAAAAACCACCCTAATTGTGTAAAGTCTACAGACCATGAGGGAAAGGAAATAACTCTCTTTCAACCTGCGAGAGAATTCCTGCCTATGGTTGATGAGGTTTTTAGAACCCTCGTCGAGATTACTAAAGATATAGAAGGCGTAAAAGTTGAAAATCACAAATTTTGCGTTTCTGTACATTACCGTAATGTAGAGGAGAATAATTGGACAATAGTTGGACAACGTGTCCATGATGTCTTGCAAAATTACCCTCGTTTATGTTCAACTCATGGACGGAAGGTTTTAGAAGTTCGTCCTGTGATTGACTGGAATAAAGGAAAAGCTGTTGAATTTTTACTTGAATCTCTAGGATTTAATGATAGTGATGGTGTGCTTCCCATCTACATTGGAGATGATAAAACTGATGAAGATGCATTCAAGGTGCTGCGAGAGAGCAATAGAGGTTATGGGATTTTGGTTTCGTCGGTGAGGAAAGAAAGCAATGCCTGCTACTCTCTCCGAGACCCCAATGAGGTCATGAAATTTCTCCAACTCCTGGTGAACTGGAAAAGACAAGAAAGAAAGCATGGGAAGATGTAA 1176 0.4167 MDLKSSHVSPVLTDPVPVNKSRLGIHSSLLAYSQQDSPVSPGKYSRSNSRKSTGSVDDVRSNGWLDAMKASSPPRKKLLKGSSFQIASIDFEIEDYCTWMLEYPSALDSFEKIVDLAQNKKIAMFLDYDGTLSPIVDDPDCAFMSESMRTTVRSVATYFPTAIISGRSRDKVFDLVKLTELYYAGSHGMDIIGPVSETLSKNHPNCVKSTDHEGKEITLFQPAREFLPMVDEVFRTLVEITKDIEGVKVENHKFCVSVHYRNVEENNWTIVGQRVHDVLQNYPRLCSTHGRKVLEVRPVIDWNKGKAVEFLLESLGFNDSDGVLPIYIGDDKTDEDAFKVLRESNRGYGILVSSVRKESNACYSLRDPNEVMKFLQLLVNWKRQERKHGKM* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1402 391 CDD HAD_TPP 123 373 - -
Vra7g1402 391 SUPERFAMILY HAD-like 123 383 IPR036412 -
Vra7g1402 391 Pfam Trehalose-phosphatase 125 368 IPR003337 GO:0003824|GO:0005992
Vra7g1402 391 TIGRFAM T6PP: trehalose-phosphatase 120 379 IPR003337 GO:0003824|GO:0005992
Vra7g1402 391 MobiDBLite consensus disorder prediction 34 58 - -
Vra7g1402 391 Gene3D - 218 391 IPR023214 -
Vra7g1402 391 Gene3D - 122 210 IPR023214 -
Vra7g1402 391 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 124 342 IPR006379 -
Vra7g1402 391 PANTHER TREHALOSE-PHOSPHATE PHOSPHATASE F-RELATED 1 387 - -
Vra7g1402 391 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 387 IPR044651 GO:0004805|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1402 Vra-Chr7 31183303 31189285 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1402 109 375 Trehalose Biosynthesis Gene Families AT1G23870 26.855 3.63e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1402 K01087 - tcc:18606311 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1402 7 31183303 31189285 Vra7g1402 7 31183303 31189285 ECH