LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra7g1402	ATGGATTTGAAGTCCTCTCATGTTTCTCCTGTTCTCACTGACCCTGTTCCCGTCAATAAGTCAAGGCTTGGAATACATTCTAGTTTGCTGGCTTATTCCCAGCAAGATTCACCAGTCTCTCCGGGGAAGTACTCAAGAAGCAATTCAAGGAAAAGTACAGGGAGTGTCGATGATGTGAGGTCCAATGGTTGGTTGGATGCCATGAAGGCTTCTTCCCCTCCAAGGAAGAAGCTACTTAAAGGGTCCAGTTTTCAGATTGCTTCAATTGACTTTGAGATTGAAGATTATTGTACATGGATGCTTGAATATCCTTCAGCACTAGACTCTTTTGAGAAAATCGTTGACCTTGCTCAGAATAAGAAGATTGCTATGTTTCTAGACTATGACGGCACACTTTCACCGATTGTAGATGATCCGGATTGTGCCTTTATGTCCGAATCTATGCGAACAACTGTGAGAAGTGTGGCAACATATTTCCCCACAGCAATCATCAGTGGAAGAAGCCGTGACAAGGTTTTTGATCTTGTTAAACTAACAGAACTGTACTACGCTGGTAGTCATGGGATGGACATTATTGGCCCTGTCAGTGAGACTTTGTCCAAAAACCACCCTAATTGTGTAAAGTCTACAGACCATGAGGGAAAGGAAATAACTCTCTTTCAACCTGCGAGAGAATTCCTGCCTATGGTTGATGAGGTTTTTAGAACCCTCGTCGAGATTACTAAAGATATAGAAGGCGTAAAAGTTGAAAATCACAAATTTTGCGTTTCTGTACATTACCGTAATGTAGAGGAGAATAATTGGACAATAGTTGGACAACGTGTCCATGATGTCTTGCAAAATTACCCTCGTTTATGTTCAACTCATGGACGGAAGGTTTTAGAAGTTCGTCCTGTGATTGACTGGAATAAAGGAAAAGCTGTTGAATTTTTACTTGAATCTCTAGGATTTAATGATAGTGATGGTGTGCTTCCCATCTACATTGGAGATGATAAAACTGATGAAGATGCATTCAAGGTGCTGCGAGAGAGCAATAGAGGTTATGGGATTTTGGTTTCGTCGGTGAGGAAAGAAAGCAATGCCTGCTACTCTCTCCGAGACCCCAATGAGGTCATGAAATTTCTCCAACTCCTGGTGAACTGGAAAAGACAAGAAAGAAAGCATGGGAAGATGTAA	1176	0.4167	MDLKSSHVSPVLTDPVPVNKSRLGIHSSLLAYSQQDSPVSPGKYSRSNSRKSTGSVDDVRSNGWLDAMKASSPPRKKLLKGSSFQIASIDFEIEDYCTWMLEYPSALDSFEKIVDLAQNKKIAMFLDYDGTLSPIVDDPDCAFMSESMRTTVRSVATYFPTAIISGRSRDKVFDLVKLTELYYAGSHGMDIIGPVSETLSKNHPNCVKSTDHEGKEITLFQPAREFLPMVDEVFRTLVEITKDIEGVKVENHKFCVSVHYRNVEENNWTIVGQRVHDVLQNYPRLCSTHGRKVLEVRPVIDWNKGKAVEFLLESLGFNDSDGVLPIYIGDDKTDEDAFKVLRESNRGYGILVSSVRKESNACYSLRDPNEVMKFLQLLVNWKRQERKHGKM*	392

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vra7g1402	391	CDD	HAD_TPP	123	373	-	-
Vra7g1402	391	SUPERFAMILY	HAD-like	123	383	IPR036412	-
Vra7g1402	391	Pfam	Trehalose-phosphatase	125	368	IPR003337	GO:0003824\|GO:0005992
Vra7g1402	391	TIGRFAM	T6PP: trehalose-phosphatase	120	379	IPR003337	GO:0003824\|GO:0005992
Vra7g1402	391	MobiDBLite	consensus disorder prediction	34	58	-	-
Vra7g1402	391	Gene3D	-	218	391	IPR023214	-
Vra7g1402	391	Gene3D	-	122	210	IPR023214	-
Vra7g1402	391	TIGRFAM	HAD-SF-IIB: HAD hydrolase, family IIB	124	342	IPR006379	-
Vra7g1402	391	PANTHER	TREHALOSE-PHOSPHATE PHOSPHATASE F-RELATED	1	387	-	-
Vra7g1402	391	PANTHER	TREHALOSE 6-PHOSPHATE PHOSPHATASE	1	387	IPR044651	GO:0004805\|GO:0005992

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra7g1402	Vra-Chr7	31183303	31189285	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra7g1402	109	375	Trehalose Biosynthesis Gene Families	AT1G23870	26.855	3.63e-10	60.1

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra7g1402	K01087		-	tcc:18606311	562.377

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vra7g1402	7	31183303	31189285	Vra7g1402	7	31183303	31189285	ECH

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