Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1376 ATGGACAATAGACACAAATGCAAGCTTTGTTCCAGGTCTTTCACCAATGGCAGAGCCCTTGGTGGTCACATGAAAGCTCATCTCGCTTCTCTCCCTCTTCCTCCAAAGCCTCAAACTTTAACTCACTCCTCCTCCTTCACTTATTCCTCTTCCTCAGACTCTCAACAACACCACCTCAAAGAACAAGATTCCCTTAGTTACGCGCTCAGGGAGAATCCTAAGAAGACTTTCAGAGTAACGGATCCTGAAGACAGAGAGAGCGAGACCGAGTCAAAGAACCCAACTCGCCAACGATCCAAGAGGAACCGCAAATCCGCCATGCTCAAGCTCAGCTTCGTCGTCTCCACACCTCTCATCACCGAACCCGAACCTGTGAGTTCGGTCTCCGACACCTCCCCGGAGGAAGACGTAGCCATGAGCCTCATGATGCTCTCCCGCGACACGTGGAACGTAGTCACCAATGCAGGTCCACCGCAGAGATCAAAGAGGCGCTGCACGGGATCAGAAACCAAGCTCAAGAAACTCCGCGGCAAGTACCTCTGTCACACTTGCGGCAAAGCCTTTCGATCCTCTCGAGCCTTGGGGAGTCACAAAACCATTTGTTGTCGCCAAGTTGAAGCTCAGAATCAAAACAACGACAACAATAGTATTAAGGTTTTTGAATGTCCCTTTTGTTACAAGGTGTTCGGCTCTGGTCAGGCTCTGGGTGGACATAAGAGATCTCACCTAATCCCTTCATCATCTTCAACAGTTAACGATTCTCTTAAATTCAAACAGACCTTCATAGATCTCAACATGCCGGCTCAGCCGGAAGAGGACGACCTTAGTGTTGTCTCTGATGCCTGA 846 0.4965 MDNRHKCKLCSRSFTNGRALGGHMKAHLASLPLPPKPQTLTHSSSFTYSSSSDSQQHHLKEQDSLSYALRENPKKTFRVTDPEDRESETESKNPTRQRSKRNRKSAMLKLSFVVSTPLITEPEPVSSVSDTSPEEDVAMSLMMLSRDTWNVVTNAGPPQRSKRRCTGSETKLKKLRGKYLCHTCGKAFRSSRALGSHKTICCRQVEAQNQNNDNNSIKVFECPFCYKVFGSGQALGGHKRSHLIPSSSSTVNDSLKFKQTFIDLNMPAQPEEDDLSVVSDA* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1376 281 Gene3D Classic Zinc Finger 176 242 - -
Vra7g1376 281 ProSiteProfiles Zinc finger C2H2 type domain profile. 220 242 IPR013087 -
Vra7g1376 281 Pfam C2H2-type zinc finger 4 29 - -
Vra7g1376 281 Pfam C2H2-type zinc finger 179 198 - -
Vra7g1376 281 Pfam C2H2-type zinc finger 219 243 - -
Vra7g1376 281 SUPERFAMILY beta-beta-alpha zinc fingers 179 242 IPR036236 -
Vra7g1376 281 ProSitePatterns Zinc finger C2H2 type domain signature. 7 27 IPR013087 -
Vra7g1376 281 MobiDBLite consensus disorder prediction 31 106 - -
Vra7g1376 281 MobiDBLite consensus disorder prediction 36 55 - -
Vra7g1376 281 ProSiteProfiles Zinc finger C2H2 type domain profile. 5 32 IPR013087 -
Vra7g1376 281 ProSitePatterns Zinc finger C2H2 type domain signature. 222 242 IPR013087 -
Vra7g1376 281 SUPERFAMILY beta-beta-alpha zinc fingers 3 30 IPR036236 -
Vra7g1376 281 SMART c2h2final6 179 199 IPR013087 -
Vra7g1376 281 SMART c2h2final6 220 242 IPR013087 -
Vra7g1376 281 SMART c2h2final6 5 27 IPR013087 -
Vra7g1376 281 MobiDBLite consensus disorder prediction 56 96 - -
Vra7g1376 281 ProSiteProfiles Zinc finger C2H2 type domain profile. 179 200 IPR013087 -
Vra7g1376 281 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 281 - -
Vra7g1376 281 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 3 281 IPR044303 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1376 Vra-Chr7 30859884 30861736 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1376 1 276 C2H2 Transcription Factor Family AT1G02030 36.334 3.30e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra7g1376 zf-C2H2_6 3.4e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1376 - - gmx:100806512 381.333