Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1362 ATGGCACCCAGGATCAATGATGCCACACCCAACAGATCACCGATGAACAGAGGTTCATGGACCCCAGAGGAAGACAGAAAGCTTGCCCAATGCATTCAATTTCATGGTGCAAAGAGGTGGAAGACTATTGCAGTTAAATCAGGTTTGAATAGATGTGGGAAGAGTTGCAGACTGAGATGGTTAAACTATCTGAGACCTAATATCAAGAGGGGAAACATATCAGATGAAGAAGAAGATTTGATTCTTAGGCTTCACAGACTCTTGGGAAACAGGTGGTCTTTGATAGCTGGTAGGCTTCCAGGACGAACAGACAACGAAATTAAGAATTATTGGAATTCTCATTTGTGCAAAAAAGTGAATCAGAGAGAGGAGAGACCAGAATCTTCAACAACACATGAAATAGTTGGCCAGAATCAGAATCATGGGGACAACCTTGCACTGTCAGAGAACGAGGTTGCAACCAAGGATATTGGTAACTTAGATGTTACTTTCGACATTGATGAGTTTTTCAACTTCTCTGAGGAATCCTGTGGGCTAGATTGGCTGAACAAGTACTTGGAACTTGACCACATTCCTCAAACCACAGAAAACTCTTAA 597 0.4204 MAPRINDATPNRSPMNRGSWTPEEDRKLAQCIQFHGAKRWKTIAVKSGLNRCGKSCRLRWLNYLRPNIKRGNISDEEEDLILRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVNQREERPESSTTHEIVGQNQNHGDNLALSENEVATKDIGNLDVTFDIDEFFNFSEESCGLDWLNKYLELDHIPQTTENS* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1362 198 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Vra7g1362 198 Gene3D - 17 69 - -
Vra7g1362 198 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 197 - -
Vra7g1362 198 SUPERFAMILY Homeodomain-like 15 111 IPR009057 -
Vra7g1362 198 MobiDBLite consensus disorder prediction 122 142 - -
Vra7g1362 198 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Vra7g1362 198 PANTHER TRANSCRIPTION FACTOR MYB114-LIKE 6 197 - -
Vra7g1362 198 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Vra7g1362 198 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Vra7g1362 198 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Vra7g1362 198 MobiDBLite consensus disorder prediction 1 23 - -
Vra7g1362 198 CDD SANT 19 64 IPR001005 -
Vra7g1362 198 Gene3D - 72 142 - -
Vra7g1362 198 SMART sant 16 66 IPR001005 -
Vra7g1362 198 SMART sant 69 117 IPR001005 -
Vra7g1362 198 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Vra7g1362 198 CDD SANT 74 115 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1362 Vra-Chr7 30707853 30709285 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1362 15 141 MYB Transcription Factor Family AT3G13540 61.417 1.17e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra7g1362 Myb_DNA-binding 2.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1362 K09422 - gmx:100799575 345.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0390 11 2851050 2852055 Vra7g1362 7 30707853 30709285 PCT