Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1360 ATGGACATGGAAGAATCAAACCCTATGGAAACACAACTTCAACCAACCACTTCATCATCCTCTTTCTCCATTACTACCTCCACCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCTTCCTCCGTAGACCAACAACAACCTACAAACACCAAGGACAAAAAAACCAAGAAAACCAACGTTAACACCAATCATGGCAACCACCCCACCTACAGAGGAGTTCGCATGCGCCAATGGGGCAAATGGGTGTCCGAAATCAGAGAGCCCAGAAAGAAGTCAAGAATTTGGCTCGGAACTTTTCCTACGCCGGACATGGCGGCGCGAGCCCACGACGTGGCGGCTCTCACCATCAAAGGCAGCTCCGCCTTCCTCAATTTCCCCGAGTTAGCCGCCGAGCTGCCCCGCCCGACCACGAACTCCCCCAAGGATATCCAGGTGGCCGCCGCCAAAGCCGCAGCCTTGGATTTCCGCCCTCGAAGCCATGAAGCCGAGTCCGAGCTTAGCCGAGGCGGCTCCATTTCCAATTCTTCGTCGAATTCGTCGTTGAAGAGTGAGGATGACACATTCATGGACCTCCCCGATCTCTCTCTGGACTTGAGCCATGGAGTTGATGAGTTTCATTATTCCTCGGCTTGGCTTGTAGCCGGAAGCGAACTCGGGTTTCGGCTTGAAGAGCCTTTTCTTTGGGAATCATATTAA 693 0.5325 MDMEESNPMETQLQPTTSSSSFSITTSTSSSSSSSSSSSSVDQQQPTNTKDKKTKKTNVNTNHGNHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTPDMAARAHDVAALTIKGSSAFLNFPELAAELPRPTTNSPKDIQVAAAKAAALDFRPRSHEAESELSRGGSISNSSSNSSLKSEDDTFMDLPDLSLDLSHGVDEFHYSSAWLVAGSELGFRLEEPFLWESY* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1360 230 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 16 227 - -
Vra7g1360 230 Pfam AP2 domain 67 117 IPR001471 GO:0003700|GO:0006355
Vra7g1360 230 SUPERFAMILY DNA-binding domain 68 126 IPR016177 GO:0003677
Vra7g1360 230 MobiDBLite consensus disorder prediction 7 47 - -
Vra7g1360 230 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 16 227 - -
Vra7g1360 230 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Vra7g1360 230 PRINTS Ethylene responsive element binding protein signature 91 107 IPR001471 GO:0003700|GO:0006355
Vra7g1360 230 CDD AP2 69 127 IPR001471 GO:0003700|GO:0006355
Vra7g1360 230 MobiDBLite consensus disorder prediction 153 183 - -
Vra7g1360 230 SMART rav1_2 68 131 IPR001471 GO:0003700|GO:0006355
Vra7g1360 230 MobiDBLite consensus disorder prediction 165 183 - -
Vra7g1360 230 ProSiteProfiles AP2/ERF domain profile. 68 125 IPR001471 GO:0003700|GO:0006355
Vra7g1360 230 MobiDBLite consensus disorder prediction 1 71 - -
Vra7g1360 230 Gene3D AP2/ERF domain 68 126 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1360 Vra-Chr7 30670245 30671810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1360 61 226 AP2-EREBP Transcription Factor Family AT2G44940 51.232 1.75e-60 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra7g1360 AP2 9.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1360 - - gmx:100101914 288.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0392 11 2859631 2860610 Vra7g1360 7 30670245 30671810 PCT