Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1355 ATGATGGTTCAAAAGGAAGATTTGGGTTTGAGTCTAAGCCTCAACTTCCGTCACAATATTCCCAATCCTCAACATCTTACTCTCATCTCCTCTTCCCCTTCCGCTTCAAATCCTTTTAAACCCTCTTGGAACGACGCTTTTGCCTCCTCGGATCGAAACTCGGACACATGCAGAGGCGAAACCCGATCGTTCCTACGCGGAATCGACGTGAATCGGTTGCCTTCGGCCGTGGACATGGAAGAGGAAGCGGGAGTTTCGTCTCCGAACAGCACCGTTTCGAGCGTGAGCGGAAAACGAAGCGAGCGAGAACCCACCGGCGAAGAACACGACATGAACAGAGCCTGTTCCCGCGGAGTCAGCGACGAAGAAGACGGCGAAACCTCAAGGAAAAAGCTCAGACTCTCCAAAGACCAATCAGCTATTCTGGAAGAAAGTTTCAAAGAGCACAATACCCTCAACCCGAAGCAAAAGCTGGCACTGGCAAAGCAGCTAGGTCTTCTACCAAGACAAGTTGAGGTGTGGTTCCAGAACCGAAGAGCAAGGACTAAGCTGAAGCAAACCGAGGTGGACTGCGAGGTGTTGAAAAGGTGCTGTGAGAATCTGACGGAGGAAAATAGAAGGTTGCAGAAGGAAGTCCAGGAGCTTAGAGCACTGAAACTTTCCCCTCAGTTTTACATGCAAATGACCCCTCCCACCACACTCACCATGTGCCCATCTTGCGAGCGGGTGGCTGTTCCGTCGTCGGCCGTGGATGCCGGCACGCGTCATCATCCGATGGGCCAGGCACAGAGCCACAGTCGGGCCCTAGGCATGGGGCCGTGGGGTTCGGCAGCTTCCATTCCGCAGCGGGGCTTTGATGGTTTCCACCACTGA 873 0.5361 MMVQKEDLGLSLSLNFRHNIPNPQHLTLISSSPSASNPFKPSWNDAFASSDRNSDTCRGETRSFLRGIDVNRLPSAVDMEEEAGVSSPNSTVSSVSGKRSEREPTGEEHDMNRACSRGVSDEEDGETSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLLPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSSAVDAGTRHHPMGQAQSHSRALGMGPWGSAASIPQRGFDGFHH* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1355 290 SMART halz 185 228 IPR003106 GO:0006355|GO:0043565
Vra7g1355 290 MobiDBLite consensus disorder prediction 251 290 - -
Vra7g1355 290 ProSitePatterns 'Homeobox' domain signature. 160 183 IPR017970 GO:0000981|GO:0006355
Vra7g1355 290 PANTHER - 4 282 - -
Vra7g1355 290 MobiDBLite consensus disorder prediction 100 134 - -
Vra7g1355 290 Pfam HD-ZIP protein N terminus 2 103 IPR006712 GO:0005634
Vra7g1355 290 PRINTS Lambda-repressor HTH signature 156 165 IPR000047 GO:0003677
Vra7g1355 290 PRINTS Lambda-repressor HTH signature 165 181 IPR000047 GO:0003677
Vra7g1355 290 CDD homeodomain 129 186 IPR001356 GO:0003677
Vra7g1355 290 Pfam Homeodomain 129 183 IPR001356 GO:0003677
Vra7g1355 290 CDD bZIP 178 217 - -
Vra7g1355 290 MobiDBLite consensus disorder prediction 84 99 - -
Vra7g1355 290 SMART HOX_1 127 189 IPR001356 GO:0003677
Vra7g1355 290 MobiDBLite consensus disorder prediction 77 134 - -
Vra7g1355 290 SUPERFAMILY Homeodomain-like 118 186 IPR009057 -
Vra7g1355 290 Pfam Homeobox associated leucine zipper 185 219 IPR003106 GO:0006355|GO:0043565
Vra7g1355 290 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 4 282 - -
Vra7g1355 290 Gene3D - 133 183 - -
Vra7g1355 290 Coils Coil 184 221 - -
Vra7g1355 290 ProSiteProfiles 'Homeobox' domain profile. 125 185 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1355 Vra-Chr7 30553210 30555057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1355 1 280 Homeobox Transcription Factor Family AT4G16780 63.380 5.46e-107 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vra7g1355 HD-ZIP_N 1.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1355 K09338 - gmx:100787231 489.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0396 11 2890772 2892823 Vra7g1355 7 30553210 30555057 PCT