Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1350 ATGGCCAACGCAGCTGAACTTTCAGCTTTGAATCGCATCAAGTTGCATCTTTTAGGTGAACTCTCTCCACTCGCCACTCCCCAAAATAACCAACCTTCCTTCCAATTTAACCAAACCAATCAAAGCCCTTCTCAATCTTCTTCCTCTGATTCTTGCCTCTCCTTCAATCACTACCTCACTGACCTACTCGACCCTCAAATTCAATTACCCCTTTTCGAATTCGACTCCAAACCCCAAATAATCGACCTCGACACCCCGAAACCCCTCACATCGCTTCACAAGAAACCTCAACTAAATCGGAAACCTTCTCTGCAAATCTCTCTCCCCAAGAAGACCGAGTGGATCCAATTTGGGAAACCGGATCCCAACCCGCCTGTGGTATTGCCGGAGAACCAGCCCGAGAACCAGCCCGAGAAGAAGCACTACAGAGGAGTCCGGCAGCGGCCTTGGGGAAAGTTCGCCGCCGAGATCCGCGACCCGAACAAGCGCGGGTCGAGAGTGTGGCTTGGAACCTTCGACACCGCCATCGAGGCCGCCAAGGCCTACGACCGTGCTGCCTTCAGGCTCCGCGGCTCAAAGGCCATCCTCAACTTCCCGCTCGAAGCAGGCGCGGTGGAGGAGGCCAACGACGCCGAAGGCGAAAGGAAGCGGCGGCGCGAGGAGGAGGAGGAGGTAGAGGAAGTGAAGCCAGTTGTGAAGAAGGAGAAAACGACGGAACAGGAGGTGAACTGTTTTCGGGAGATGCCGTTAACGCCGTCTATGTGGACCGGGTTCTGGGATAATGATGTGAAGGAGATTTTCAACGTTCCGCCGTTGTCGCCGTTATCTCCTCTTCCGGCTTTTGGATTTTCACAACTAATGGTTGTGTGA 870 0.5379 MANAAELSALNRIKLHLLGELSPLATPQNNQPSFQFNQTNQSPSQSSSSDSCLSFNHYLTDLLDPQIQLPLFEFDSKPQIIDLDTPKPLTSLHKKPQLNRKPSLQISLPKKTEWIQFGKPDPNPPVVLPENQPENQPEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFRLRGSKAILNFPLEAGAVEEANDAEGERKRRREEEEEVEEVKPVVKKEKTTEQEVNCFREMPLTPSMWTGFWDNDVKEIFNVPPLSPLSPLPAFGFSQLMVV* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1350 289 MobiDBLite consensus disorder prediction 24 50 - -
Vra7g1350 289 PRINTS Ethylene responsive element binding protein signature 142 153 IPR001471 GO:0003700|GO:0006355
Vra7g1350 289 PRINTS Ethylene responsive element binding protein signature 181 201 IPR001471 GO:0003700|GO:0006355
Vra7g1350 289 Gene3D AP2/ERF domain 140 201 IPR036955 GO:0003700|GO:0006355
Vra7g1350 289 CDD AP2 140 199 IPR001471 GO:0003700|GO:0006355
Vra7g1350 289 SUPERFAMILY DNA-binding domain 141 200 IPR016177 GO:0003677
Vra7g1350 289 SMART rav1_2 141 205 IPR001471 GO:0003700|GO:0006355
Vra7g1350 289 Coils Coil 204 228 - -
Vra7g1350 289 Pfam AP2 domain 141 191 IPR001471 GO:0003700|GO:0006355
Vra7g1350 289 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 274 - -
Vra7g1350 289 ProSiteProfiles AP2/ERF domain profile. 141 199 IPR001471 GO:0003700|GO:0006355
Vra7g1350 289 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 4 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1350 Vra-Chr7 30498905 30499964 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1350 1 289 AP2-EREBP Transcription Factor Family AT5G47230 49.351 1.53e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra7g1350 AP2 6.1e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1350 K09286 - gmx:100800453 356.681