Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1349 ATGTACGGACACAGTACATACGAATCAGATTTGGCACTCTATTCGATTCGCCGCCACTTGCTCGGCGATTCCGAATCAATACTCGGAATCCCCGCATGTGCATCGGGTCGGGCATCCGGTGTCAGTCTATTGTATTCCTGTTTGAGCGACAATTGGGGTGACCTTCCGTTAAAGGAGGATGATTCCGAAGACATGGTGCTCTACGGCGTGCTCCGTGACGCCGTTAACGTGGGGTGGGTCCCATCTCTGGAGGCCGGGTCACCCGATACCGTGTTGTCGGGTTTTCCTACGGATTTCACGGTGAAGCTGGAACCGGACGTGTTGCCAACTGTGACGAGTTCGCCTCCTTTGACAGCGGTGGTGAAGCAGGAGAAGCAGGCTTCTCCGGCGAAGGGGAAGCACTACCGCGGCGTAAGACAGCGGCCGTGGGGGAAGTTCGCGGCCGAGATCCGGGACCCGGCGAAAAACGGGGCGCGGGTTTGGCTGGGAACGTTTGAGACCGCGGAGGATGCGGCGTTAGCCTACGACCGTGCCGCGTACCGTATGCGGGGGTCGAGGGCGTTGCTGAATTTTCCGTTGAGAGTTAACTCAGGCGAACCCGAGCCGGTGAGGGTGAGTTCGAAGCGGTCTTCATCGCCGGAAAGTGGGGCGGGTCCGGCGAAGAAGAAGAAAGTGGGGGAGTCTGGGCAAGTGGGGAGTCAAGTGGCAGAGTGCATACGTGGCGAAGAATTATTGGCGAGCTGA 744 0.5874 MYGHSTYESDLALYSIRRHLLGDSESILGIPACASGRASGVSLLYSCLSDNWGDLPLKEDDSEDMVLYGVLRDAVNVGWVPSLEAGSPDTVLSGFPTDFTVKLEPDVLPTVTSSPPLTAVVKQEKQASPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPEPVRVSSKRSSSPESGAGPAKKKKVGESGQVGSQVAECIRGEELLAS* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1349 247 PANTHER DNA-BINDING DOMAIN 25 234 IPR044808 GO:0003700|GO:0009873
Vra7g1349 247 MobiDBLite consensus disorder prediction 198 232 - -
Vra7g1349 247 Gene3D AP2/ERF domain 133 195 IPR036955 GO:0003700|GO:0006355
Vra7g1349 247 Pfam AP2 domain 134 184 IPR001471 GO:0003700|GO:0006355
Vra7g1349 247 PANTHER BNAANNG21280D PROTEIN 25 234 - -
Vra7g1349 247 PRINTS Ethylene responsive element binding protein signature 135 146 IPR001471 GO:0003700|GO:0006355
Vra7g1349 247 PRINTS Ethylene responsive element binding protein signature 158 174 IPR001471 GO:0003700|GO:0006355
Vra7g1349 247 CDD AP2 133 192 IPR001471 GO:0003700|GO:0006355
Vra7g1349 247 SMART rav1_2 134 198 IPR001471 GO:0003700|GO:0006355
Vra7g1349 247 ProSiteProfiles AP2/ERF domain profile. 134 192 IPR001471 GO:0003700|GO:0006355
Vra7g1349 247 SUPERFAMILY DNA-binding domain 134 194 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1349 Vra-Chr7 30478831 30479936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1349 8 245 AP2-EREBP Transcription Factor Family AT4G17500 55.926 6.61e-80 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra7g1349 AP2 9.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1349 K09286 - gmx:100803653 338.576