Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1337 ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTTTGGCGTAACGGGCCACCTGAGAAGCCTGTACTATGCAATGCATGTGGATCTCGATGGAGGACTAAGGGAACACTTGCAAATTATACCCCTTTGCATGCACGGGCAGAAAATGCTGATTATGAGGATCAAAAGGTTTCCAGGGTAAAAAGCATATCATTAAATAAGAACAAAGAAGTGAAATTGGTCAAGAGAAAGCAGAACTATGATAATGCTGCATCTGGAGGGTTCGTTCCAGATTATAATCAAGGACACCTAAAGGTTGTGGATGAAGATACAAGCAACAGATCAAGCTCAGGGTCAGCTATTTCTAACTCGGAGAGCTGTGCTCAATTTGGTGGCACAGATGCTAGTGATTTGACAGGTCCTGCACAGTCAGTGGTCTGGGATGCCATGGTGCCTTCTAAAAAGAGGACATGTTCAGGTCGTCCAAAGCCTTCATCTGTTGAGAAGCTCACAAGAGACCTGTGTACTATTCTTCATGAACAACAGTCTTGTTTCTCTGCATCTTCTGAAGAGGATCTTCTTTTGGAAAGTGACACACCAATGGTCTCTGTTGAGATAGGACATGGAAGCATTCTCATCAGGCATCCTAGCTCTATAGCTCGTGATGAAGAGTCCGAGGCCAGCTCTCTTTCAGTTGATAATAAACAATGCCTAATGAATGAAGCATATTCGTTCTCTAGTACGATTCCTTTGTATAGTAGTGATCACAGTGGCATGAACTTTTCATCTCAAGGAATTGAAAAGATAGAAAACTCAGCTGTCCAAATCATGCAACAAGAGAAACTTGAAAGGGACAAGTCTCAGCTTGAAAAACAAGTTCCTGGAAATCACAATTCACTGTTGTGCTCAATAGATTTAAATGATGTGGTGAACTATGAGGAGTTTATGAGGAACTTGACAAAGGAAGAGCAGCAGCAATTACTAAAGTATCTTCCTGTGGTTGATACCTCTAATTTTATTGATAGCCTTAAAAACATGTTCAGTAGCTTCCAATTCAAGGAGAACTTGACTTATTTTCAGCAACTTCTTGGGGAAGGTGTCTTTGACATCTCTTTGTTGGGGACAAAACCTGAAGAATGGAAGACATTGAAAAGGCTTGTGTTATCTAATATGTCAAAATCAAAATGGGTAGAACACTATAATTTTCTCAAGAAATGTGAAAACAAAGCTGGAAAAGCTAATGGTCCAGGATCTACTGCTACGGAATCAAGTAATATTACAAATGCCAAGAGAATGCGTGAGCATGACAGCCAAAATCAAAATTTTGCAGAATTGAAGACAACAATGAGGAGCCCCAAAAGGGTGATCATGAATCCGGTATGTGAAGGCAAAGAAGTTGTAGAAGAAGGCTCAAGCTGCAGCCCAAAAAGCCTTTTTTCTTTGCCACATGGTGTTGGTGGCTTGCACATGCTGGATTCTTGTAACTATGTTGGTGAGAGTTCTGAGGATCTGCTGTTAGATGTGCCTTCTAACAGTTCTTTTCCGCAGGCAGAGCTCCTGCTCCCAACTTTAAGCTATGGTGCTAAGGTCTGCACCACTAGTAGCTCAGTACACTCAACTGTTACTCATCGTCCTTAA 1632 0.4179 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAENADYEDQKVSRVKSISLNKNKEVKLVKRKQNYDNAASGGFVPDYNQGHLKVVDEDTSNRSSSGSAISNSESCAQFGGTDASDLTGPAQSVVWDAMVPSKKRTCSGRPKPSSVEKLTRDLCTILHEQQSCFSASSEEDLLLESDTPMVSVEIGHGSILIRHPSSIARDEESEASSLSVDNKQCLMNEAYSFSSTIPLYSSDHSGMNFSSQGIEKIENSAVQIMQQEKLERDKSQLEKQVPGNHNSLLCSIDLNDVVNYEEFMRNLTKEEQQQLLKYLPVVDTSNFIDSLKNMFSSFQFKENLTYFQQLLGEGVFDISLLGTKPEEWKTLKRLVLSNMSKSKWVEHYNFLKKCENKAGKANGPGSTATESSNITNAKRMREHDSQNQNFAELKTTMRSPKRVIMNPVCEGKEVVEEGSSCSPKSLFSLPHGVGGLHMLDSCNYVGESSEDLLLDVPSNSSFPQAELLLPTLSYGAKVCTTSSSVHSTVTHRP* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1337 543 Gene3D - 3 86 IPR013088 GO:0006355|GO:0008270
Vra7g1337 543 CDD ZnF_GATA 6 54 IPR000679 GO:0006355|GO:0043565
Vra7g1337 543 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 295 407 IPR044867 -
Vra7g1337 543 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Vra7g1337 543 Pfam Asx homology domain 281 375 IPR028020 -
Vra7g1337 543 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Vra7g1337 543 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Vra7g1337 543 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Vra7g1337 543 PANTHER OSJNBB0038F03.10 PROTEIN 1 541 IPR044589 -
Vra7g1337 543 PANTHER GATA TRANSCRIPTION FACTOR-LIKE PROTEIN 1 541 - -
Vra7g1337 543 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1337 Vra-Chr7 30320694 30326575 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1337 1 518 C2C2-Gata Transcription Factor Family AT4G17570 51.481 3.53e-151 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vra7g1337 ASXH 5.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1337 - - gmx:100799745 934.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0418 11 3036177 3041414 Vra7g1337 7 30320694 30326575 PCT