Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1333 ATGGAACTTAGTTTTGGCCTTCTTTCTGTCATACTATTTCTACCTGCACTCTGTATATCACAGGACACTTTTACATGCTCCAGAGCAACATACTATGGTAGCCCTGATTGCTATGGGAATCCAAAGGGAGCTTGTGGCTTTGGCGAATATGGGAGAACGGTGAATGATGGAAGTGTGGCAGGAGTGTCAAGGCTATGGAGGAATGGAAGCGGTTGTGGAGCATGCTATCAGGCTAGGTGCAAGATACCACAGTATTGCGATGAAAACGGAGCATTCGTGGTGGCAACAGATTATGGTGAGGGAGACAGAACAGACTTCATCATGAGCCCACGCGCCTTCTCGAGATTGGGACGCAACGCAGACGCATCTGCAGAGTTGTTCAAATATGGTGTTGTGGATATTGAATACAGAAGGGTCCCGTGTAGTTATTCTGGCTACAATGTCGTGTTTAAGGTTCATGAACACAGCAGAAACCCTGACTACTTTGCTGTTGTGGTTCTCTATGTAGACGGAACATACGATGTCACTGCTGTTGAGTTGTTTCAGCAAGACTGCCAAGAATGGAAGGCATTGCGCAGGGCCTTTGGGGCAATGTTTGACTATAGCAACCCTCCAAGAGGTGAAATCTACTTGAGGTTCCAAGTTAGTGGCAGTGCAGGGATTTATTGGGTTCAGTCCAGGAATGCTATCTCCAGTGATTGGACGGCCGGAGCAACATATGACACCATGGTGCAGCTTAATTAG 744 0.4718 MELSFGLLSVILFLPALCISQDTFTCSRATYYGSPDCYGNPKGACGFGEYGRTVNDGSVAGVSRLWRNGSGCGACYQARCKIPQYCDENGAFVVATDYGEGDRTDFIMSPRAFSRLGRNADASAELFKYGVVDIEYRRVPCSYSGYNVVFKVHEHSRNPDYFAVVVLYVDGTYDVTAVELFQQDCQEWKALRRAFGAMFDYSNPPRGEIYLRFQVSGSAGIYWVQSRNAISSDWTAGATYDTMVQLN* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1333 247 Pfam Expansin C-terminal domain 148 230 IPR007117 -
Vra7g1333 247 PANTHER EXPANSIN-B3 4 247 - -
Vra7g1333 247 Pfam Lytic transglycolase 59 136 IPR009009 -
Vra7g1333 247 PRINTS Expansin/Lol pI family signature 23 38 IPR007118 GO:0005576
Vra7g1333 247 PRINTS Expansin/Lol pI family signature 62 80 IPR007118 GO:0005576
Vra7g1333 247 PRINTS Expansin/Lol pI family signature 129 145 IPR007118 GO:0005576
Vra7g1333 247 PRINTS Expansin/Lol pI family signature 188 202 IPR007118 GO:0005576
Vra7g1333 247 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576
Vra7g1333 247 Gene3D - 142 243 IPR036749 -
Vra7g1333 247 SUPERFAMILY PHL pollen allergen 147 241 IPR036749 -
Vra7g1333 247 SUPERFAMILY Barwin-like endoglucanases 12 145 IPR036908 -
Vra7g1333 247 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 247 - -
Vra7g1333 247 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 146 IPR007112 -
Vra7g1333 247 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 160 242 IPR007117 -
Vra7g1333 247 Gene3D - 16 141 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1333 Vra-Chr7 30288084 30289462 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1333 3 246 Expansin Gene Family AT4G17030 59.592 7.16e-112 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1333 - - gmx:100779487 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0420 11 3051393 3053263 Vra7g1333 7 30288084 30289462 PCT