Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1317 ATGAAGTGTTTCTTCTTCAAAGACAAGTGTAAATCCGCCCCCGAATTGCATAAGAAGAAAAACCCCGCCGTGACCCGCGCCGTCAACTCCACCGGCTCCTTATCGTCGCCCAAGAGCGTGAAGGACTTGTACAGAGAGAAAGAGCACACCTTCAGAGTTTTCAATTTTCAGGAGCTCAGAGATGCCACCCAAGGTTTCGATAGGACGCTCAAGCTTGGAGAAGGGGGGTTCGGGAGTGTGTATAAAGGATCCATCAGACCCTCCGATGGGCAGGGTGATCCTTTTCCAGTAGCTATCAAAAAGCTCAACACGCGTGGCTTCCAGGGTCATAAAGAATGGCTTGCAGAAGTTCAATTTCTTGGCATTGTTAATCACCCAAATTTGGTTAAGCTTTTGGGATACTGCTCTCTGGATGGAGAAAGAGGAATCCAACGGCTGCTGGTGTACGAGTTCATGCCCAACAGGAGCTTGGAGGATCACCTCTTCAATAAAAGTTTACCACCTCTCCCTTGGAAAACAAGACTGGAGATTATGCTTGGTGCCGCTCAAGGATTAGCTTATCTCCATGAAGGACTGGAAATTCAGGTGATCTACCGAGACTTCAAATCTTCAAATGTTCTATTGGATGAGGATTTCCATCCAAAGCTCTCAGATTTTGGTCTTGCAAGAGAAGGACCACAAGGCGATCAGACTCATGTATCCACTGCTGTGGTTGGGACACAGGGGTATGCTGCACCAGAGTACATTGAAACGGGTCATCTGAAAGTTCAGAGCGACATGTGGAGTTTTGGTGTAGTGCTGTATGAGATCCTCACAGGAAGAAGATCATTGGAAAGAAACCGTCCCACTGCAGAACAAAAGCTTCTCGATTGGGTGAAACAGTATCCTGCCGACACCAGCAGGTTCGTGGTGATAATGGATCCTCGTCTCAGGAACCAGTATTCTCCCCAAGCAGCTCGGAAAATAGCCAAGTTGGCTGATAGCTGCTTGAAGAAGAATCCAGAAGATAGACCATCCATGAGTCAGATAGTGGAAGCCTTGAAGCAAGCCTTGCAACATTCTGAAATTCCAAACTCTTCTCAAGACATTGCTGAATCCTCCTCATCCCGGTCAAAACTGGTCAGAAAAAACGTCATTCAGATGGCAGCATGGTTGTGA 1158 0.4724 MKCFFFKDKCKSAPELHKKKNPAVTRAVNSTGSLSSPKSVKDLYREKEHTFRVFNFQELRDATQGFDRTLKLGEGGFGSVYKGSIRPSDGQGDPFPVAIKKLNTRGFQGHKEWLAEVQFLGIVNHPNLVKLLGYCSLDGERGIQRLLVYEFMPNRSLEDHLFNKSLPPLPWKTRLEIMLGAAQGLAYLHEGLEIQVIYRDFKSSNVLLDEDFHPKLSDFGLAREGPQGDQTHVSTAVVGTQGYAAPEYIETGHLKVQSDMWSFGVVLYEILTGRRSLERNRPTAEQKLLDWVKQYPADTSRFVVIMDPRLRNQYSPQAARKIAKLADSCLKKNPEDRPSMSQIVEALKQALQHSEIPNSSQDIAESSSSRSKLVRKNVIQMAAWL* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1317 385 CDD STKc_IRAK 72 349 - -
Vra7g1317 385 ProSiteProfiles Protein kinase domain profile. 66 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1317 385 Pfam Protein tyrosine and serine/threonine kinase 71 347 IPR001245 GO:0004672|GO:0006468
Vra7g1317 385 Gene3D Phosphorylase Kinase; domain 1 46 151 - -
Vra7g1317 385 ProSitePatterns Protein kinases ATP-binding region signature. 72 101 IPR017441 GO:0005524
Vra7g1317 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Vra7g1317 385 PANTHER OS01G0588500 PROTEIN-RELATED 17 370 - -
Vra7g1317 385 SUPERFAMILY Protein kinase-like (PK-like) 49 347 IPR011009 -
Vra7g1317 385 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL20-RELATED 17 370 - -
Vra7g1317 385 Gene3D Transferase(Phosphotransferase) domain 1 152 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1317 Vra-Chr7 30062942 30066731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1317 3 347 Glycoside Hydrolase AT3G07070 43.978 1.60e-91 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vra7g1317 PK_Tyr_Ser-Thr 2.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1317 - K00924 gmx:100786966 681.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1317 7 30062942 30066731 Vra7g1317 7 30062942 30066731 ECH
Vra11g0430 11 3119184 3121421 Vra7g1317 7 30062942 30066731 PCT