Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1304 ATGGCTCTTTCTCTTTTGTGTCCTCTTCTTGTCACCTTTCTTTTCATGCAAACTCTGGCAGATACTTCCTTTATTCAATCTCGTGCAGCATATTATCCAAACTCTGAAGAAAAGGGCACAGACGTTGGTGCATGTGGATTTGGTTCCTTTGGTGCCACCGTTAATGGTGGGGATGTATCAGCTGCATCTGATCTTTATCGAAATGGTGTTGGCTGTGGTGCCTGTTACCAGGTGAGATGTAGGAATAGTGCTTATTGCTCAGGCAATGGTGTGACGATAGTAATAACTGACCAAGGTTCAAGTGCTAACACTGACTTCATTCTTAGCCAACGAGCTTTTGGTGGGATGGCTATCAACAAGGATGCAGCTGCTTCTCTATTAGCTCTTGGCATAGTTGATATTGAATATAGACGGGTTTCATGCAGCTACCCAGGCAAAAACATTACAGTTAAGATACATGAGAGCAGCAACAACCCTCACTATTTGGCTTTTGTCTTATGGTTTCAACAAGGAAGTAAAGACATAACTGCTGTGCAACTTTGCGAGACTGAGAACTTTGTGTGCAAGCTACTGGATCGGAGTCATGGGGCAGTATGGACCACCACCGCGCCACCTAGTGGACCTTTGGGTTTGAGGATGTTGTTTAGTGATGAACAAGGGGAAGACGAATCATGGGTCGTTCCGGTTAATAACATTCCACAAGACTGGAAGGCTGAAGAAACGTACGACTTAGGGGTCCAAGTGAACCAATAG 753 0.4475 MALSLLCPLLVTFLFMQTLADTSFIQSRAAYYPNSEEKGTDVGACGFGSFGATVNGGDVSAASDLYRNGVGCGACYQVRCRNSAYCSGNGVTIVITDQGSSANTDFILSQRAFGGMAINKDAAASLLALGIVDIEYRRVSCSYPGKNITVKIHESSNNPHYLAFVLWFQQGSKDITAVQLCETENFVCKLLDRSHGAVWTTTAPPSGPLGLRMLFSDEQGEDESWVVPVNNIPQDWKAEETYDLGVQVNQ* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1304 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 146 IPR007112 -
Vra7g1304 250 Pfam Expansin C-terminal domain 148 219 IPR007117 -
Vra7g1304 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 160 244 IPR007117 -
Vra7g1304 250 SUPERFAMILY PHL pollen allergen 146 243 IPR036749 -
Vra7g1304 250 Gene3D - 143 248 IPR036749 -
Vra7g1304 250 PANTHER EXPANSIN-B3 4 249 - -
Vra7g1304 250 SUPERFAMILY Barwin-like endoglucanases 10 145 IPR036908 -
Vra7g1304 250 Pfam Lytic transglycolase 63 136 IPR009009 -
Vra7g1304 250 Gene3D - 13 142 IPR036908 -
Vra7g1304 250 PANTHER POLLEN ALLERGEN ORY S 1, PUTATIVE-RELATED 4 249 - -
Vra7g1304 250 PRINTS Expansin/Lol pI family signature 41 59 IPR007118 GO:0005576
Vra7g1304 250 PRINTS Expansin/Lol pI family signature 129 145 IPR007118 GO:0005576
Vra7g1304 250 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1304 Vra-Chr7 29877248 29879223 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1304 2 243 Expansin Gene Family AT4G17030 42.387 1.44e-59 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1304 - - gmx:100812555 453.366