Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1296 ATGGTTTTCACTGCCAATGATTTACAAGAATGGAAAGATTTTCCCAAAGGACTCAAGGTTCTTCTTCTTGAGGGAGACAGCATTTCTGCTGCCGAGATAAGAGCAAAGCTTGAAGCCATGGACTATAATGTTTCTACATTCTGCGATGAGAATGAAGCCTTGTCAGCAATCTCAAGTAGACCTGAAAGCTTCCACATTGCCATAGTAGAGGTGAGTTCGAGCAGTAGCCAGGGAGGTTTCAAATTTCTTGAGAATGCCAAGGACTTGCCAACAATTATGACTTCTAACAACCATTGCCTGAACACCATGATGAAGTGCATAGCGCTTGGTGCAGTTGAGTTCCTCAGCAAACCACTCTCTGAGGACAAGCTCAGAAATATCTGGCAGCATGTGGTTCACAAGGCATTCAGTTCTGGGACAAGTATCCTGTGTGAATCACTTAAACCTGTCAAGGAATCTCTAGTGACTATGTTGCAGCTCCCAACAGACAATGAACAACATGAAAGTAGAGTATCCATTGATATAGAGAAAGTATCCAAGTTTACTGATAATGATGATGTACTGTCTCCTGGAAATGATAAATATCCAGCTCCTTCAACCCCACAATTGATGCATGGGACAAGATTGTTAGACGATGGTGATTGCCAAGAGCAGACTAATTGCTCCACAGAAAAAGAAAGTGGGGAACATGATGGAGAATCTAAATCTGTCGAAACTACATGTGGAAATTTGAATGCTGAAACTGAAAGTACTCCTCAAGAAAGGAAATCTGATATGACTTTACCTAGGGAGGAAGTGAATTTAGTTGACGATTCCAAGGTTGAGAGTATTGCCTCTCAACATACACAAAAAAGAAAGGTTCTAAGCAACCCTGACAAAAATACAAAATCTGCAAATAAAGTAGGCATTCTTAGTGATTCTTGCGAGATAAAGCCAAGTCGAAAGAAGATGAAAGTAGACTGGACGCCTGAGCTGCACAAAAAATTTGTGAAGGCAGTTGAGCAACTAAGCATTGATCAAGCCATTCCTTCAAGAATATTAGAATTAATGAAAGTGGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTTCAGAAGTACAGAATGCATAGGAGACAAATCTTTCCCAAGGAAGAAGATCGGAAATGGTTGAATCAAAGAGAAAGGAGCTATTGTGTTCAAAGACCAATTATGGCCTTTCCTCCATATCATTCTAATCGCACCCATCCTATGGCTCCTATATATCCTATGTGGGGACAACCTAGCACTCAAACGGCTGGCATGCATATTTGGAGCACTCCTGGTTATCCCTTGTGGCAGCCTACTGCTGAACATTGGCACTGGAAACCGTTTCCAGGGATGCATGCAGATGCATGGGGCTGTCCAGTGTTACCGGTAGCACCTCCTCAAGCTCCTTTTCCCTGCTCTAAGAATATGCCTGCATTGCTCAATGCCGATGCAACAGGTCACACGTTTACCATGCCACAAAGTTCCTTAGAGCATTATCCGGCAGAGGAGGTTGTTGACAAGGTTGTGAAAGAGGCAGTAAGCAAACCATGGCTACCCTTGCCTTTGGGCCTGAAACCCCCTTCGACAGACAGTGTGTTGGCTGAGTTATCAAGACAAGGAATTTGCAGCATCCCTCCTAGGAGCAGCAAGGGTTGA 1665 0.4348 MVFTANDLQEWKDFPKGLKVLLLEGDSISAAEIRAKLEAMDYNVSTFCDENEALSAISSRPESFHIAIVEVSSSSSQGGFKFLENAKDLPTIMTSNNHCLNTMMKCIALGAVEFLSKPLSEDKLRNIWQHVVHKAFSSGTSILCESLKPVKESLVTMLQLPTDNEQHESRVSIDIEKVSKFTDNDDVLSPGNDKYPAPSTPQLMHGTRLLDDGDCQEQTNCSTEKESGEHDGESKSVETTCGNLNAETESTPQERKSDMTLPREEVNLVDDSKVESIASQHTQKRKVLSNPDKNTKSANKVGILSDSCEIKPSRKKMKVDWTPELHKKFVKAVEQLSIDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRQIFPKEEDRKWLNQRERSYCVQRPIMAFPPYHSNRTHPMAPIYPMWGQPSTQTAGMHIWSTPGYPLWQPTAEHWHWKPFPGMHADAWGCPVLPVAPPQAPFPCSKNMPALLNADATGHTFTMPQSSLEHYPAEEVVDKVVKEAVSKPWLPLPLGLKPPSTDSVLAELSRQGICSIPPRSSKG* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1296 554 MobiDBLite consensus disorder prediction 183 262 - -
Vra7g1296 554 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Vra7g1296 554 Pfam Response regulator receiver domain 20 127 IPR001789 GO:0000160
Vra7g1296 554 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 316 370 IPR006447 GO:0003677
Vra7g1296 554 Gene3D - 18 139 - -
Vra7g1296 554 Gene3D - 313 374 - -
Vra7g1296 554 Pfam Myb-like DNA-binding domain 319 368 IPR001005 -
Vra7g1296 554 SMART REC_2 18 128 IPR001789 GO:0000160
Vra7g1296 554 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 1 553 - -
Vra7g1296 554 MobiDBLite consensus disorder prediction 277 299 - -
Vra7g1296 554 SUPERFAMILY CheY-like 16 134 IPR011006 -
Vra7g1296 554 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 313 372 IPR017930 -
Vra7g1296 554 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 553 IPR044825 GO:0003700|GO:0045893
Vra7g1296 554 SUPERFAMILY Homeodomain-like 314 373 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1296 Vra-Chr7 29778486 29785007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1296 1 551 Response Regulator Gene Family AT4G18020 50.347 2.54e-145 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vra7g1296 Response_reg 1.6e-07 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1296 - - gmx:100777535 941.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0451 11 3330688 3336996 Vra7g1296 7 29778486 29785007 PCT