Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1286 ATGGGTTGCACCATGAGAGAAAAACACATCAGGGCTAATCGGAGACCGCGATCGGCGAAACCTGACTCCGATTCTTGCGACAAAGATGCCATATCCAAATCCATAGCCGAGTCTGGTCTCAAGCCCTTTAGATACCATACGGCTTCCAATGATTCTTCCCCAAGCCTAAATTCAAACCCTAATTTGGAGGAAACCGGGTGGGGTTACTGTACAGAGGAACAATTGGAAGAGATTCTGTTGAAAAACTTGGAGTTTATTTACAATGAAGCTGTCTCGAAGCTTGTTGCGTTGGGTTACGATGAGGATGTTGCTGTTAAGGCCATGCTTCGAAATGGGCATTGTTATGGTGGCATGGATGCGCTGACAAATATTTTGCACAATTCCTTGGCGTATTTAAATAGTAATAGTGATGGTGGTGGGAATATGGATGAGACTGAGCCTGTGTTCTCTAATTTGAGGCAGTTAGAGGAGTACTCTGTGGCCGCTTTGGTGTGTTTGGTTCAACAGGTGAGGCCACATTTGAGCAAAGGTGATGCCATGTGGTGTTTGCTCATGAATGATCTTCATGTTGGGAGGGCTAGTTCTATGGATATTCCTGTGCCAGGCACTGGGAACCCTGCTCCGGCTTCCGGTGAGGGTGGTGGCAATTCGGTTGGTGTTATGGGGCCGGCTTTTTGTAGGTTTCACGGAGGGTGGGGATTTGCAAATGGGGGAAGCTTGGATTTTCCTGTGAATGGGGTATTCTCTTGCGGGACAGAGATGAATTTGCAGCTACAAAGAGACATTGAGTTTCCGAAGAGGTTTAATCTGTCTCCTTCAATGAAGTCTTTATTGAAAAGAAATGTTGCAATGTTTGCTGCTGGTTTTAGGGCAAACTCGAAGCAGTTGCAGGCGCAGGCAAAGACCATTTCTGGGCGGAGTACTGCACATAGTTTGGATTCTTTTGCTGCGACCGGGACAGGAGTCCCGGCTGATCAATCTGGAGGAGATTCACAGAATGTCGATAACCAAGATGCTGTGAATTCGGTGCTGAGTAAATTTCGTGATTTGAATCTTGACGAGAATTTGGAGCTTGTGGCGGAAGATCAGAAGGATGAGGTCATAGTCACTTTATTTCATCAGATTAAGGATCTTGAGAAGCAGGTCAATGAGCGAAAAGACTGGGCTCATCAGAAGGCAATGCAGGCGGCTAGAAAGCTAAGTAGTGATCTAACTGAGCTCAAGATGTTGCGGATGGAAAGAGAGGAGACTCAGAAATTGAAGAAAGGGAAACCGGCCCTTGAGGACACAACCATGAAGAGGCTATCAGAGATGGAGAATGCATTGAGAAAGGCCAGTGGTCAATTGGACCTTGCGAATGCAGCTGTGAGGAGACTAGAAACTGAGAATGCAGAAATGAAAGCAGAGATGGAGGCTTCTAAATTAAGTGCATCAGAGTCAGTGACAGCTTGCTTAGAAGTTGCTAAAAGGGAGAAAAAATGTTTAAAAAAACTTCTAGCTTGGGAAAAACAGAAAGCTAAGCTGCAGCAAGAGATTTCTGGTGAAAAACAGAAGATATCGGAGACACAAGAAATGTTGGTTCAGATTAGACAGTGTCAAAAGGAGGCTGAGGTGAAGTGGAAGGAGGAGTTGAAGGCTAAAGAGGAAGCCTTAGCAGTGGTTGAGGAGGAACGGTGCTCTAAGGAAGCAGCTGAATCTAATAATAAGAGGAGGATTGAGGCTTTGCGTCTGAAGATAGAGATAGATTTCCAGCGTCACAAGGATGATCTACTAAGACTGGAACAGGAACTTTCGCGCCTTAAAGCCTCTGCTCAGTCTGCTGAGTTGCATCACCAATCAAGCACTTCACCCACAAGCGACTCCGAAGGCACAAAGCCCCAAAGAGAGACCATTGCTAGGCTGCTCCAACAATTAGATAACCTGGACGATTTTTCCGATAAAGAAGTGAATAGCAACAGAGAATGCATTATATGTATGAAAGATGAAGTCTCCATTGTTTTCTTGCCATGTGCACACCAAGTTATGTGTGCTAGTTGCAGTGATGAGTATGGAAGAAAAGGTAAGGCTGCTTGTCCCTGCTGCAGGGTTCAAATTCAACAGAGAATTCGTGTATTTGGGGCAAGTTCCTAG 2130 0.4545 MGCTMREKHIRANRRPRSAKPDSDSCDKDAISKSIAESGLKPFRYHTASNDSSPSLNSNPNLEETGWGYCTEEQLEEILLKNLEFIYNEAVSKLVALGYDEDVAVKAMLRNGHCYGGMDALTNILHNSLAYLNSNSDGGGNMDETEPVFSNLRQLEEYSVAALVCLVQQVRPHLSKGDAMWCLLMNDLHVGRASSMDIPVPGTGNPAPASGEGGGNSVGVMGPAFCRFHGGWGFANGGSLDFPVNGVFSCGTEMNLQLQRDIEFPKRFNLSPSMKSLLKRNVAMFAAGFRANSKQLQAQAKTISGRSTAHSLDSFAATGTGVPADQSGGDSQNVDNQDAVNSVLSKFRDLNLDENLELVAEDQKDEVIVTLFHQIKDLEKQVNERKDWAHQKAMQAARKLSSDLTELKMLRMEREETQKLKKGKPALEDTTMKRLSEMENALRKASGQLDLANAAVRRLETENAEMKAEMEASKLSASESVTACLEVAKREKKCLKKLLAWEKQKAKLQQEISGEKQKISETQEMLVQIRQCQKEAEVKWKEELKAKEEALAVVEEERCSKEAAESNNKRRIEALRLKIEIDFQRHKDDLLRLEQELSRLKASAQSAELHHQSSTSPTSDSEGTKPQRETIARLLQQLDNLDDFSDKEVNSNRECIICMKDEVSIVFLPCAHQVMCASCSDEYGRKGKAACPCCRVQIQQRIRVFGASS* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1286 709 SMART ring_2 655 694 IPR001841 -
Vra7g1286 709 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 708 - -
Vra7g1286 709 SUPERFAMILY RING/U-box 636 701 - -
Vra7g1286 709 Coils Coil 583 610 - -
Vra7g1286 709 Pfam Family of unknown function (DUF6592) 82 196 IPR046527 -
Vra7g1286 709 Coils Coil 491 525 - -
Vra7g1286 709 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 642 706 IPR013083 -
Vra7g1286 709 Pfam Zinc finger, C3HC4 type (RING finger) 652 700 - -
Vra7g1286 709 Coils Coil 537 557 - -
Vra7g1286 709 MobiDBLite consensus disorder prediction 316 335 - -
Vra7g1286 709 Coils Coil 435 476 - -
Vra7g1286 709 PANTHER OS05G0141500 PROTEIN 1 708 IPR046934 -
Vra7g1286 709 ProSiteProfiles Zinc finger RING-type profile. 655 695 IPR001841 -
Vra7g1286 709 MobiDBLite consensus disorder prediction 1 29 - -
Vra7g1286 709 MobiDBLite consensus disorder prediction 604 626 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1286 Vra-Chr7 29607595 29613835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1286 641 705 C3H Transcription Factor Family AT1G73950 36.232 7.87e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1286 - - gmx:100777787 1207.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0466 11 3452651 3456282 Vra7g1286 7 29607595 29613835 PCT