Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1283 ATGCCAGTTCCACTTGCTCCCTACCCTGCACCACCAGCTCCTTATACACCACCAGCTAATGGTGCACAGAGTCAACTTGTCTGTTCTGGATGTAGAAACCTTCTCATGTATCCAGTTGGAGCCACCTCCGTGTGCTGTGCTGTTTGCAATGCAGTCACAGCAGTGCCACCTCCTGGCACAGAAATGGCCCAGTTAGTTTGCGGAGGTTGCCATACTCTACTCATGTACATCCGTGGAGCGACAAATGTGCAATGTTCTTGTTGTCACACGGTCAATCTAGCGTTGGAAGCAAATCAGGTGGCACATGTCAACTGTGGGAACTGCAGGATGCTGCTCATGTACCAATATGGAGCAAGATCCGTGAAATGTGCAGTTTGCAATTTTGTGACATCAGTTGGGGCCAGTGGGACGACAAGCACCACTGAGCAGAAGTTCAACACTGTAACCATACAATAG 456 0.4956 MPVPLAPYPAPPAPYTPPANGAQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATNVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASGTTSTTEQKFNTVTIQ* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1283 151 PANTHER PROTEIN LSD1 1 140 IPR040319 -
Vra7g1283 151 Pfam LSD1 zinc finger 67 91 IPR005735 -
Vra7g1283 151 Pfam LSD1 zinc finger 28 52 IPR005735 -
Vra7g1283 151 Pfam LSD1 zinc finger 105 129 IPR005735 -
Vra7g1283 151 PANTHER PROTEIN LOL1 1 140 - -
Vra7g1283 151 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 64 93 IPR005735 -
Vra7g1283 151 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 102 132 IPR005735 -
Vra7g1283 151 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 25 55 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1283 Vra-Chr7 29579913 29582280 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Vra7g1283 zf-LSD1 9.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1283 - - cit:102618163 262.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0467 11 3457155 3459243 Vra7g1283 7 29579913 29582280 PCT