Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1280 ATGGACGCTCGAGAACCGCCTCGACCACAGCCGCCCTCCATCATGGCGGGCCCCACCTCATATGCCCCCACCAACATCGGCCCTAATTCGTCCGGTGCCGTCATGATGGCGCCCGCCACGGCGCGATTTCCCTTCGGCGTCTTGCCGCCGCCGCAACAACAGCCTCCGCCAGTGTCGGAGCCTTTCCCTGTCTCCCCCGCAGCCGCTTACGACGGCTCCTCCTCGCCGATGAAGCCATGCTCGCTCGCCAAGAAGAAGCGCGGTCGTCCCCGGAAGTACTCGCCGGACGGAAACATTGCCCTCGGCCTCGCTCCTACCCATGCTTCTCCTCCTCCACCTTCCTCCGCCGCCGCTTCCGGCGGCGGAATAGGTGGCGAGTCGGCCGGTACTGCCTCCGCCGATGCTCCGGCGAAGAAGCACCGAGGACGGCCTCCCGGGTCTGGGAAGAAACAACTGGATGCTCTCGGAGCTGGTGGGGTTGGATTCACTCCCCACGTGATCTTGGTGGAGTCTGGCGAGGACATCACGGCAAAAATTATGTCCTTTTCTCAGCAAGGGCCTCGGACAGTTTGTATTCTCTCGGCTATTGGTGCAATCTGTAATGTTACCCTTAGACAACCTGCACTATCTGGTGGTACGGCAACATACGAGGGCCGATTTGAGATTATATCATTATCAGGTGCCATGCAACAATCTGAAAGTAACGGTGAACGTAGCAGAACATGCACTTTGAATGTAACCCTTGCAGGGTCCGATGGACGTGTTTTGGGTGGCGGAGTTGCTGGAACGCTAACTGCGGCATCAACTGTACAGGTCATAGTGGGTAGCTTTATTGTGGATGGAAAAAAGTCGAACTCGAATGTCCTCAAATCTGGGCCTTCTTCTGCACCGCCACCCCAAATGCTAACATTTGGTGCACCCATGACTCCAACTAGTCCTACTTCTCAAGGGCCTTCAACTGAGTCCTCCGAGGAACATGACCACACTCCTTTTTGTAGGGGGCCTGGGTCTGGGCCTGGACCTGGACTCTACAACAATACTAGTCAACCCATGCATAATATGCCCATGTACCATCATCCGCTATGGGCTGGCCAAACTCATCAGTGA 1107 0.5682 MDAREPPRPQPPSIMAGPTSYAPTNIGPNSSGAVMMAPATARFPFGVLPPPQQQPPPVSEPFPVSPAAAYDGSSSPMKPCSLAKKKRGRPRKYSPDGNIALGLAPTHASPPPPSSAAASGGGIGGESAGTASADAPAKKHRGRPPGSGKKQLDALGAGGVGFTPHVILVESGEDITAKIMSFSQQGPRTVCILSAIGAICNVTLRQPALSGGTATYEGRFEIISLSGAMQQSESNGERSRTCTLNVTLAGSDGRVLGGGVAGTLTAASTVQVIVGSFIVDGKKSNSNVLKSGPSSAPPPQMLTFGAPMTPTSPTSQGPSTESSEEHDHTPFCRGPGSGPGPGLYNNTSQPMHNMPMYHHPLWAGQTHQ* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1280 368 SMART AT_hook_2 138 150 IPR017956 GO:0003677
Vra7g1280 368 SMART AT_hook_2 84 96 IPR017956 GO:0003677
Vra7g1280 368 MobiDBLite consensus disorder prediction 17 31 - -
Vra7g1280 368 MobiDBLite consensus disorder prediction 1 16 - -
Vra7g1280 368 SUPERFAMILY AF0104/ALDC/Ptd012-like 162 278 - -
Vra7g1280 368 Gene3D - 164 289 - -
Vra7g1280 368 MobiDBLite consensus disorder prediction 1 156 - -
Vra7g1280 368 MobiDBLite consensus disorder prediction 44 63 - -
Vra7g1280 368 CDD DUF296 163 277 IPR005175 -
Vra7g1280 368 MobiDBLite consensus disorder prediction 284 298 - -
Vra7g1280 368 MobiDBLite consensus disorder prediction 305 320 - -
Vra7g1280 368 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 57 328 - -
Vra7g1280 368 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 57 328 IPR039605 GO:0003680
Vra7g1280 368 MobiDBLite consensus disorder prediction 284 349 - -
Vra7g1280 368 ProSiteProfiles PPC domain profile profile. 158 298 IPR005175 -
Vra7g1280 368 Pfam Plants and Prokaryotes Conserved (PCC) domain 164 277 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1280 Vra-Chr7 29541648 29546870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1280 9 368 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 43.062 6.54e-76 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1280 - - var:108323770 637.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0470 11 3475190 3478862 Vra7g1280 7 29541648 29546870 PCT