Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1279 ATGGCTGGTTTGGATTTAGGAAGCGCTTCACGCTTTGTTCAAAACCTTCACAGACCGGACTTGCACTTGCAGCAACTACATCACGATTCGGAGGACCAAGAGACGCCGCCACAGAATCGCGGAGGGGTGCCGTTCGATGACGATGACCGAAGCCAAGGATTGGAGCTAGCTTCCACGGGTCCTGGTGATGTGGTCGGTCGGCGTCCACGTGGAAGGCCACCGGGATCCAAGAACAAGCCGAAACCGCCGGTGATAATCACGCGGGAGAGCGCCAACACTCTCCGAGCGCACATCCTCGAGGTGGGAAGCGGCTCCGACATATTCGACTGCGTCACCACCTACGCGCGCCGCCGCCAGCGCGGGATCTGCATCCTCAGCGGCAGCGGCACCGTCACCAATGTCAGCCTCCGCCAGCCGGCCGCTGCAGGCGCCGTCGTCACGCTCCACGGCCGCTTTGAGATTCTTTCCCTTTCCGGCTCCTTCCTCCCGCCGCCGGCTCCGCCTGGGGCTACCAGCCTCACTATCTATGTGGCCGGAGGGCAGGGCCAGGTGGTCGGAGGAAACGTGGTTGGAGAGCTGACAGCAGCGGGGCCGGTGATCGTCATCGCGGCGTCGTTCACGAACGTGGCCTACGAGAGGCTACCGTTAGAAGAAGAAGAACAGCTTCAGATTCAGGCACCCCCTACGACGTCGTCTCACGGAGTTGGAAATAACAACGGCAACAATAGCAATAACAACTCTTTCCCGGACCCTTCTTCCGGACTTCCCTTCTTTAATTTACCTCTGAATATGCAGAACGTTCAGTTACCTGGGGAGGGTTGGGGGGGAAACGCTGCTTCACGTCCACCACCTTTTTGA 858 0.5956 MAGLDLGSASRFVQNLHRPDLHLQQLHHDSEDQETPPQNRGGVPFDDDDRSQGLELASTGPGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGSGSDIFDCVTTYARRRQRGICILSGSGTVTNVSLRQPAAAGAVVTLHGRFEILSLSGSFLPPPAPPGATSLTIYVAGGQGQVVGGNVVGELTAAGPVIVIAASFTNVAYERLPLEEEEQLQIQAPPTTSSHGVGNNNGNNSNNNSFPDPSSGLPFFNLPLNMQNVQLPGEGWGGNAASRPPPF* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1279 285 MobiDBLite consensus disorder prediction 220 254 - -
Vra7g1279 285 MobiDBLite consensus disorder prediction 223 254 - -
Vra7g1279 285 ProSiteProfiles PPC domain profile profile. 91 228 IPR005175 -
Vra7g1279 285 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 283 IPR014476 GO:0003680
Vra7g1279 285 Gene3D - 94 229 - -
Vra7g1279 285 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 23 1 283 - -
Vra7g1279 285 PIRSF ESCAROLA 7 284 IPR014476 GO:0003680
Vra7g1279 285 SUPERFAMILY AF0104/ALDC/Ptd012-like 91 224 - -
Vra7g1279 285 CDD DUF296 95 170 IPR005175 -
Vra7g1279 285 Pfam Plants and Prokaryotes Conserved (PCC) domain 95 208 IPR005175 -
Vra7g1279 285 MobiDBLite consensus disorder prediction 28 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1279 Vra-Chr7 29528846 29530639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1279 1 283 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 67.541 1.59e-104 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1279 - - pvu:PHAVU_003G230600g 473.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0472 11 3490042 3491613 Vra7g1279 7 29528846 29530639 PCT