Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1278 ATGATTAAACAAGTGGCAGAGGAGCGTCTGAGACATTTTGAAGGCGTAGAAGCCAAAGGAAAGAAGCTAGCTATCTCCAATTTGTTCATTCCCACATCGACTAACTCTCCCATCACTTATCTATCTATCTATCTTAAATGTCAGTTTCAGTACCATGGCTACAGGGATTGGCCTTGTCTCGGTGACCAGATCCAAAAATTCTACCATCCAAACCCTAACTCCATCACCACCTCTCCTCCATCGATGTGGAATCCAAGGGACCAAGAAGATGACTCCTGGGAGGTCAGAGCCTTTGCAGAGGACACCAGCAACATCATGGGCACCACCTGGCCTCCAAGGTCCTACACCTGCACTTTCTGTAGAAGGGAGTTCCGTTCAGCACAAGCCCTTGGTGGCCACATGAACGTTCACCGCCGCGACCGTGCTCGCCTCCACCAACCCTCACCCATCAACAACCACCACCACCACCACCACTACCCCATCTCCCCTCTCTCCCGCTCACACCACTCGCCCTCTTTTCTCAACCTCTCTCACTCTCCGGACCCTTTCGCAAATGGTGGGGTCTGCCTCTTGTACCCCTTCCCTAGCCCTAACACTGCTCCATTCTCCCCTTTCGGCCACACCACCAGTTTCAATAATGCATGTGTTGACTCTCCCTCCTCTCTTTTCTCTGTCTCCTCTTCCCTTTCACACCCTCCAATGAGTCTCCCAACTTGCTCAAATGCCTCCTTTGATTTCTCAGTGGCGCAGCCTGCCACAAGGAGGAGGACCGTTCTCTCTTCTTATTCTGGGAAAGGGGAACAAGAACCCGCAACCTCCTCCGCTCATCATGGCCAACACGAGGAGCTTGATCTAGAGCTCCGTTTGGGAAATAGATCAACATCAACGTCATGA 894 0.5179 MIKQVAEERLRHFEGVEAKGKKLAISNLFIPTSTNSPITYLSIYLKCQFQYHGYRDWPCLGDQIQKFYHPNPNSITTSPPSMWNPRDQEDDSWEVRAFAEDTSNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQPSPINNHHHHHHYPISPLSRSHHSPSFLNLSHSPDPFANGGVCLLYPFPSPNTAPFSPFGHTTSFNNACVDSPSSLFSVSSSLSHPPMSLPTCSNASFDFSVAQPATRRRTVLSSYSGKGEQEPATSSAHHGQHEELDLELRLGNRSTSTS* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1278 297 MobiDBLite consensus disorder prediction 257 273 - -
Vra7g1278 297 MobiDBLite consensus disorder prediction 274 288 - -
Vra7g1278 297 Pfam C2H2-type zinc finger 115 139 - -
Vra7g1278 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 115 142 IPR013087 -
Vra7g1278 297 ProSitePatterns Zinc finger C2H2 type domain signature. 117 137 IPR013087 -
Vra7g1278 297 MobiDBLite consensus disorder prediction 257 297 - -
Vra7g1278 297 PANTHER OS07G0101800 PROTEIN 77 292 - -
Vra7g1278 297 SMART c2h2final6 115 137 IPR013087 -
Vra7g1278 297 SUPERFAMILY beta-beta-alpha zinc fingers 112 142 IPR036236 -
Vra7g1278 297 PANTHER OS07G0101800 PROTEIN 77 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1278 Vra-Chr7 29477996 29479634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1278 82 290 C2H2 Transcription Factor Family AT4G17810 37.327 1.64e-31 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1278 - - vra:106767773 591.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1278 7 29477996 29479634 Vra7g1278 7 29477996 29479634 ECH
Vra11g0473 11 3508481 3510107 Vra7g1278 7 29477996 29479634 PCT