Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1277 ATGTTGGGTGCAAAGAGTTTTTCTTATAGTGCAGCAATGGCTGCAACATTGGTTTTGGTCCTTCTCAATGTGGTTGTAGTTTGCCATGGAGACAAAACAAATTTTTTCATTAGAAAGGTCGATAGGGCTGAGGACATGCCCCTTCAAAGTGATGTATTTGTTGCCCCTTCTATACTTGGAATGGATGTGATTTGTCAAGCTAAATCCGGGATGGGAAAAAATGTTGTTTTTATTCTTTCTACACTTCAGCAAGTTGATCATGTTCCTGGTCAAGTTGCAGCTCTTGTTCTTTGCCACACAAGAGAACTGGATTATCAAATTTGCCATGAATTTGAGAGATTCAACACATATCTTCCTGATATAAAGGCTGTTGTTTTCTATGGTGGCTTCAATATCAAGGTTCACAAAGAATTACTCAAGAATGAATGTCCTCATATTTTTGTTGGAACACCTGGGAGGATTCTTGCTCTGGCTAAAGATAAGGATCTTGGTTTAAAGGACGTGAGACATTTCATACTTGATGAGTGCGACAAGATGCTTGAATCGCTTGATATGAGGAGATGTTAA 567 0.388 MLGAKSFSYSAAMAATLVLVLLNVVVVCHGDKTNFFIRKVDRAEDMPLQSDVFVAPSILGMDVICQAKSGMGKNVVFILSTLQQVDHVPGQVAALVLCHTRELDYQICHEFERFNTYLPDIKAVVFYGGFNIKVHKELLKNECPHIFVGTPGRILALAKDKDLGLKDVRHFILDECDKMLESLDMRRC* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1277 188 SMART ultradead3 41 187 IPR014001 -
Vra7g1277 188 Pfam DEAD/DEAH box helicase 55 182 IPR011545 GO:0003676|GO:0005524
Vra7g1277 188 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 55 187 - -
Vra7g1277 188 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 182 IPR027417 -
Vra7g1277 188 Gene3D - 37 188 IPR027417 -
Vra7g1277 188 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 54 188 IPR014001 -
Vra7g1277 188 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 55 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1277 Vra-Chr7 29435689 29439629 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1277 54 187 Eukaryotic Initiation Factors Gene Family AT5G11200 79.104 4.19e-75 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1277 K12812 - gmx:100785358 241.121