Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1275 ATGATGGAAGAATCAAACAAACCAATGGATGATGCATCAGCACCCAGCTGGTTATCTGATTTGGACATGGATGATTACAACTTATTTCCAGATGACTGTGCCCTGAACTTGAACTTGTTTGATGACCAAGAGTTTTTACCACACGACATTGCCAGTGCCCTTGAAGAACAGACATGGAGCCTGCAACAATCTTTGTCTTCGGAGTGCCCTTCCAAAACTGTGAGCAATTCATCCACCGATGAAACCAGTTTTGACTTTGAGAGACCAGCCAAGTTGCTGAAAACGACAAGCAGTAGTTGCTGTAACTCTGACTCATCCACCATCACCAACAACCTCTCGCCAAAACTTTCCCCATCCACATCCTTCTCCTCCTTTCAGTCTCATATTCTGTCTTTTGACAACCCCAACTCCTCCCCTCCCATCACCACTACCACCACCCACTTTTACGGCTTTGACTTAAACCCAACGCAGAACGAAATGGTGTCAGTGTCACTGCCCCAGTTGACAAAATCATGCTTCCCTGATGAAACGCCAAAAGGGTCCTCAAAAAATCACAACTTTGAAACAAAATCATCACATGGCAAGAGATCTCCTGCTCACGCTCAGGATCACATCATGGCCGAGAGAAAGCGAAGAGAGAAGCTCAGCCAGAGCTTCATTGCTCTTGCAGCTCTTGTTCCTGGCCTGAAGAAGATGGATAAGGCTTCTGTGTTAGGGGACGCTATCAAATATGTGAAAGATCTTAAAGAGCGTTTGGCAGTGCTTGAAGAGCAGAGCAAAAAAACAAGGGAAGAATCGGTGGTGGTCCTGAACAAGCCAGACCTCTCTGGCGATGATGATTCTTCTTCATGTGATGAGAGCATTGGTGCTGATAGTGTCAGTGACACTCAGTTTGAGGTTGAATCAAGAGTGTCAGGGAAGGAGATGCTGCTTCGGATCCACTGTCTGAAGCAAAAGGGGCTTCTTGTCAAATTACTGGCCGAGATTCAAAGAAATAACCTACTCGTTATTAATAGCAGCATCTTACCATTCGGTGATTCTATCCTTGACATTACCATAGTTGCTCAGATGGGAGAAAATTACAATTTGACTACGAAGGAACTTGTCAAGAACCTACGCGTGTCGGCAAATAAGGTTGTCTCATAA 1146 0.4511 MMEESNKPMDDASAPSWLSDLDMDDYNLFPDDCALNLNLFDDQEFLPHDIASALEEQTWSLQQSLSSECPSKTVSNSSTDETSFDFERPAKLLKTTSSSCCNSDSSTITNNLSPKLSPSTSFSSFQSHILSFDNPNSSPPITTTTTHFYGFDLNPTQNEMVSVSLPQLTKSCFPDETPKGSSKNHNFETKSSHGKRSPAHAQDHIMAERKRREKLSQSFIALAALVPGLKKMDKASVLGDAIKYVKDLKERLAVLEEQSKKTREESVVVLNKPDLSGDDDSSSCDESIGADSVSDTQFEVESRVSGKEMLLRIHCLKQKGLLVKLLAEIQRNNLLVINSSILPFGDSILDITIVAQMGENYNLTTKELVKNLRVSANKVVS* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1275 381 PANTHER BHLH TRANSCRIPTION FACTOR 11 380 - -
Vra7g1275 381 Gene3D - 189 266 IPR036638 GO:0046983
Vra7g1275 381 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 199 248 IPR011598 GO:0046983
Vra7g1275 381 CDD bHLH_AtNAI1_like 200 272 - -
Vra7g1275 381 Pfam Helix-loop-helix DNA-binding domain 203 248 IPR011598 GO:0046983
Vra7g1275 381 SMART finulus 205 254 IPR011598 GO:0046983
Vra7g1275 381 MobiDBLite consensus disorder prediction 181 210 - -
Vra7g1275 381 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 11 380 - -
Vra7g1275 381 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 204 265 IPR036638 GO:0046983
Vra7g1275 381 Coils Coil 238 265 - -
Vra7g1275 381 MobiDBLite consensus disorder prediction 173 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1275 Vra-Chr7 29418691 29421145 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1275 88 373 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.581 1.63e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra7g1275 HLH 4.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1275 - - var:108333272 654.44