Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1274 ATGACTTCAATGGAGGAATCATGGACTAGTTGGCTCTGTGATATGGAGCCAGATGACTACAGTTTCATCGGTCAATCAGACATAAAGGTGGAGGATGTTAATGGAAGTTTAGCATCTCCTCGTGATATAGCCACTGCATTAGAAGAGAACCCGCAGAGCTCATTTTCCACTGAGAGTCACTCTTCAGTGACTGAGAGTGGCATAGAAGAGAGGCCTTTGAAGTTACTCAAGACATGCACTTCAAACTCTGCAAAAACAGAACAACTATCACAAATGAGAGCTTCCACACCCTGCTCCTATATTCTTTCCTTTGACAACACCAATCCACCAACAGCTAAGGTTGAATCGGCTACTAAACCAGAAACCAAGGTTGTGAAACGTGGGATAGCTCTGCCTTCAAAGAATGAATCAAAACGTGTCACTCAGGAGAGCAAGAAAACGGGCTCGTCAACCAGATCTTCTCATCACACACAAGATCACATAATTGCCGAGAGAATGAGAAGAGAAAAAATTAGCCAGCAGTTCATAGCCCTCTCATCCCTTATTCCAGACCTCAAAAAGATGGACAAGGTGTCTGTATTGGTGGAAGCTATAAGGTACGTGAAGGAGTTGAAGGAAAAAGTGAAAGTGATGGAGGGACAGCGCAAAAGGAAAAGCCATGAACCGGTGACGTGTGGGAAGAAATCTCAGGTTTGTGCTGCTGCGGACGAGGATGTCTCAGACACTTCATCAAATTCCGATGAGTTCGGAAATTCTGACGATCCCTCATCCAAAACAAATCTGTTACTGCCAGAAGTAGAAGCAAGGGTGTCAAAGAAGAACGTGCTGATTCGAATCCTCTGCGAGAAAGAAAAGGCAGTGCTGGCGAACATTTTTAGAGAGATAGAGAAACTTCATCTCTCAGTCATCAATAGCAGCGCCTTATCTTTCGGCTCCTCTGTTCTCGACGCAACCATCGTAGCCGAGATGGAAGATGAATTCAACATGAGCGTGAAGGAACTGGCTGGAAATCTGAGAGTAGGACTGATGCAGTTTATGTAG 1041 0.4476 MTSMEESWTSWLCDMEPDDYSFIGQSDIKVEDVNGSLASPRDIATALEENPQSSFSTESHSSVTESGIEERPLKLLKTCTSNSAKTEQLSQMRASTPCSYILSFDNTNPPTAKVESATKPETKVVKRGIALPSKNESKRVTQESKKTGSSTRSSHHTQDHIIAERMRREKISQQFIALSSLIPDLKKMDKVSVLVEAIRYVKELKEKVKVMEGQRKRKSHEPVTCGKKSQVCAAADEDVSDTSSNSDEFGNSDDPSSKTNLLLPEVEARVSKKNVLIRILCEKEKAVLANIFREIEKLHLSVINSSALSFGSSVLDATIVAEMEDEFNMSVKELAGNLRVGLMQFM* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1274 346 MobiDBLite consensus disorder prediction 234 258 - -
Vra7g1274 346 MobiDBLite consensus disorder prediction 138 160 - -
Vra7g1274 346 MobiDBLite consensus disorder prediction 47 68 - -
Vra7g1274 346 MobiDBLite consensus disorder prediction 47 63 - -
Vra7g1274 346 PANTHER BHLH TRANSCRIPTION FACTOR 4 346 - -
Vra7g1274 346 MobiDBLite consensus disorder prediction 236 258 - -
Vra7g1274 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 155 204 IPR011598 GO:0046983
Vra7g1274 346 Gene3D - 145 206 IPR036638 GO:0046983
Vra7g1274 346 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 4 346 - -
Vra7g1274 346 SMART finulus 161 210 IPR011598 GO:0046983
Vra7g1274 346 Pfam Helix-loop-helix DNA-binding domain 159 204 IPR011598 GO:0046983
Vra7g1274 346 Coils Coil 201 221 - -
Vra7g1274 346 MobiDBLite consensus disorder prediction 111 160 - -
Vra7g1274 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 222 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1274 Vra-Chr7 29398219 29400205 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1274 9 342 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22750 37.537 2.74e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra7g1274 HLH 2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1274 - - gmx:100803386 462.996