Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1272 ATGACACAAATCTCATCGACCGTGTACTTGCCTGAATTTGGAATGGAGGACCCCACTTTGTTTCATCAATACCCGATGGATTCCTTTCCATTCCAGCTCGATGATTTTGACTTTGAGTCATTCTCCGCGTCCCCAAAGGGTTCTTCCTCTCACAAGCGCTTGAGCTCCGAAAGCACACAAAACTCTTCCCTCACTCAAAGTCCTGAAACTTCTGTTGCCCCACCAAGACCAACCAAGCAACCCAAGACTACTATGAGTACCTGGAGTGCTTACGCCACTGACATGATAGCTCCCAAGGCTGCTTCCTCTTCATCCTCCAAAATTATCTCCTTTGACAAATCCAGTGCATCTTCTGTTTCTTCCCAACAACTCTACAAACTCGATGCTGCAAAACTACTGAAGAAGCCTAAAATTGAAACTGGGTATGGTGAGAACCTGGATTTTTCTGCTGTGGCTTCTCAAACTTTCTATGACAACAATAGTTTTCTAGACTATGATAAGCACGAGAAAAAGGCTGCAGCTACAATGGCTAGAAACCCAACCCAAGCTCAAGATCACGTCATAGCCGAAAGAAAACGAAGGGAAAAACTCAGCCAAAGGTTCATTGCTCTTTCAGCCTTAGTTCCTGGACTCAAGAAGACGGACAAGGCTACCGTCCTGGAGGATGCTATAAAGTACGTGAAACAATTACAAGAACGGGTAAAGATTCTGGAGGAACAAACTGTGGATAAAACAGTTGAATCTGCAATCTTTGTGAAGAGATCTGTTGTCTTCTCCGGAGATGACAGCACCTACTCTGGTGAAAACACTGACCAATCAGTCCCCGAAATTGAAGCAAGAATTTCTGGTAAAGAGGTACTCGTCAGGCTCCACTGCGACAAACACAGTGGACGAACAGCTGCTATACTGAGGGAATTAGAGAAGCATAATCTCACAGTTCAGAGTAGCAGCTTTTTGCCCTTCGGAAATAACACTCTTGACATAACTATTGTTGCTAAGATGGGGAAGGACTACTGCTTGACTGCAAAAGATCTCATAAGAAGCTTAAGTCAGTGTTTGAGACAGCTTTCATAG 1074 0.4423 MTQISSTVYLPEFGMEDPTLFHQYPMDSFPFQLDDFDFESFSASPKGSSSHKRLSSESTQNSSLTQSPETSVAPPRPTKQPKTTMSTWSAYATDMIAPKAASSSSSKIISFDKSSASSVSSQQLYKLDAAKLLKKPKIETGYGENLDFSAVASQTFYDNNSFLDYDKHEKKAAATMARNPTQAQDHVIAERKRREKLSQRFIALSALVPGLKKTDKATVLEDAIKYVKQLQERVKILEEQTVDKTVESAIFVKRSVVFSGDDSTYSGENTDQSVPEIEARISGKEVLVRLHCDKHSGRTAAILRELEKHNLTVQSSSFLPFGNNTLDITIVAKMGKDYCLTAKDLIRSLSQCLRQLS* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1272 357 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 181 230 IPR011598 GO:0046983
Vra7g1272 357 SMART finulus 187 236 IPR011598 GO:0046983
Vra7g1272 357 MobiDBLite consensus disorder prediction 42 85 - -
Vra7g1272 357 Gene3D - 172 245 IPR036638 GO:0046983
Vra7g1272 357 PANTHER BHLH TRANSCRIPTION FACTOR 1 355 - -
Vra7g1272 357 CDD bHLH_AtNAI1_like 183 255 - -
Vra7g1272 357 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 1 355 - -
Vra7g1272 357 Coils Coil 220 247 - -
Vra7g1272 357 Pfam Helix-loop-helix DNA-binding domain 184 231 IPR011598 GO:0046983
Vra7g1272 357 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 185 241 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1272 Vra-Chr7 29370840 29373667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1272 164 353 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 47.179 1.83e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra7g1272 HLH 8.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1272 - - gmx:100798011 508.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0476 11 3532669 3534838 Vra7g1272 7 29370840 29373667 PCT