Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1264 ATGATGGGTCTTCATCAGGATCCCACCGACTCAGGCCTTCAGCTTATTCTAGGATTAGCTTTGACATCCACTCCACAAGACATCATCACTCCATCACCACCATCCATTCTTCATCATCACCATCTTACCACTCACAGGCCAAACTCCTACTCCTCTAAATCCGACCCTGAGCCTTCACTCACGTTGGCCCTGTCCCGCCAAACTTATCCGCACCCTAGAAACAAACTCTCCTCTGAGGACCCTCTTGAACACACTTCACCTCACAGTGCTATCTCCTCCTTCTCCAGTGGAAGGGTCAAGAGGGAGAGGGATCTCAGCTGTGAAGAGGTCGATGCAACAGAGACGGAGAGGGTTTCTTCAAGAGCCAGCGACGAAGAAGAAGATGGAACCACTGCCAGGAAGAAACTTAGGCTTACTAAAGAACAGTCCGCTTTGCTTGAAGAAAGCTTCAAACAACACAGCACCCTCAATCCTAAACAGAAGCAAGCTTTGGCCAAGCAGTTAAGTCTTCGGCCTCGACAAGTCGAAGTGTGGTTCCAGAACCGGAGAGCCAGAACAAAGCTGAAGCAGACAGAGGTGGACTGCGAGTTCCTAAAAAAGTGTTGTGAAACATTAACAGACGAGAACAGAAGGTTACAGAAGGAGCTGCAAGAGCTAAAGGCACTCAAACTGGCTCAGCCCTTGTACATGCCTATGTCTGCGGCAACCCTCACCATGTGTCCCTCATGTGAGAGGCTCGGTGGCGGCGCTTCCACTAAGTCACCCTTCTCCATGGCTCCTAAACCTCACTTCTTCAACCCCTTCGCCAATCCTTCTGCAGCATGTTGA 828 0.5036 MMGLHQDPTDSGLQLILGLALTSTPQDIITPSPPSILHHHHLTTHRPNSYSSKSDPEPSLTLALSRQTYPHPRNKLSSEDPLEHTSPHSAISSFSSGRVKRERDLSCEEVDATETERVSSRASDEEEDGTTARKKLRLTKEQSALLEESFKQHSTLNPKQKQALAKQLSLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLAQPLYMPMSAATLTMCPSCERLGGGASTKSPFSMAPKPHFFNPFANPSAAC* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1264 275 ProSitePatterns 'Homeobox' domain signature. 164 187 IPR017970 GO:0000981|GO:0006355
Vra7g1264 275 Coils Coil 195 225 - -
Vra7g1264 275 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 12 275 - -
Vra7g1264 275 MobiDBLite consensus disorder prediction 30 134 - -
Vra7g1264 275 Pfam Homeobox associated leucine zipper 189 223 IPR003106 GO:0006355|GO:0043565
Vra7g1264 275 PANTHER - 12 275 - -
Vra7g1264 275 MobiDBLite consensus disorder prediction 97 134 - -
Vra7g1264 275 CDD homeodomain 133 190 IPR001356 GO:0003677
Vra7g1264 275 ProSiteProfiles 'Homeobox' domain profile. 129 189 IPR001356 GO:0003677
Vra7g1264 275 SUPERFAMILY Homeodomain-like 123 190 IPR009057 -
Vra7g1264 275 SMART halz 189 232 IPR003106 GO:0006355|GO:0043565
Vra7g1264 275 Gene3D - 137 187 - -
Vra7g1264 275 SMART HOX_1 131 193 IPR001356 GO:0003677
Vra7g1264 275 MobiDBLite consensus disorder prediction 47 74 - -
Vra7g1264 275 Pfam Homeodomain 133 187 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1264 Vra-Chr7 29200016 29201496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1264 2 275 Homeobox Transcription Factor Family AT4G37790 58.020 4.01e-94 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vra7g1264 Homeodomain 2.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1264 K09338 - gmx:100807123 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0485 11 3617078 3618773 Vra7g1264 7 29200016 29201496 PCT