Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1261 ATGGGGAGAGCTCCTTGCTGTGACAAAGCCAACGTCAAGAGAGGTCCATGGTCGCCTGAAGAAGACGCCAAACTCAAATCTTACATCGAAGAGCACGGCACAGGTGGCAACTGGATAGCTTTGCCCCAGAAAATAGGTCTGAAAAGGTGCGGCAAAAGTTGTCGTCTCAGATGGCTGAACTATCTTCGCCCAAACATCAAACACGGGGGCTTCTCAGAAGAAGAAGACAACATAATTTGCAGCCTCTATGTTAACATTGGAAGCAGGTGGTCAATTATAGCAGCGCAATTACCGGGGCGCACGGATAATGACATAAAGAACTATTGGAATACCAAGCTGAAGAAGAAGCTACTGGGGAAGCAAAGGAAGGAGCATCACGCTCAAGCTCGAAGAGCTGGTGGCCTAAAGCAAGAGATCAAGAGAGAGAGTGGAGATATGATGTTACCTGTGGGAGTTATTAGCAGAACTCCTCATTGGTCATATGAACAGAATTCTTGGCCCATTCCATTGGCAAATGCTTACTCTCATCTCAACAACCAAACATCATCGATCGTACACATCCCTGACAGCACAGTCACTGCCATCATGAACTCACAATACTCATCATTTGACATTTCCTTAACACAGGACCAGCTATATCCCTCCACAGTGAACACGATCACCACGGACACGTGTCACACATCAAATGTGTTTCAAGGGTTTGGGAGCTTCTCAAGTGATTTGGCTTGCGTGGACCCGCAGCATATAGATGGATCAGAAGGGCTTTTTTATGGTAGCACAAACACGACTTCAACAGAAAGCACTAGCTGGGGAGATATAAGCTCTTTGGTTTCTCACTACGAAGCTTGCCAACAAAGAATACTTCCTCAAGAAGTTACTTTCGAGGGGTCTAGTTACTTTGCAATGCAAACGTAA 915 0.459 MGRAPCCDKANVKRGPWSPEEDAKLKSYIEEHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLGKQRKEHHAQARRAGGLKQEIKRESGDMMLPVGVISRTPHWSYEQNSWPIPLANAYSHLNNQTSSIVHIPDSTVTAIMNSQYSSFDISLTQDQLYPSTVNTITTDTCHTSNVFQGFGSFSSDLACVDPQHIDGSEGLFYGSTNTTSTESTSWGDISSLVSHYEACQQRILPQEVTFEGSSYFAMQT* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1261 304 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vra7g1261 304 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vra7g1261 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vra7g1261 304 CDD SANT 16 62 IPR001005 -
Vra7g1261 304 CDD SANT 71 111 IPR001005 -
Vra7g1261 304 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vra7g1261 304 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vra7g1261 304 SMART sant 13 64 IPR001005 -
Vra7g1261 304 SMART sant 67 115 IPR001005 -
Vra7g1261 304 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vra7g1261 304 Gene3D - 70 142 - -
Vra7g1261 304 PANTHER TRANSCRIPTION FACTOR RAX3-LIKE 1 222 - -
Vra7g1261 304 Gene3D - 7 68 - -
Vra7g1261 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vra7g1261 304 PANTHER OS09G0431300 PROTEIN 1 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1261 Vra-Chr7 29151457 29152929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1261 1 277 MYB Transcription Factor Family AT3G49690 49.684 3.74e-89 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra7g1261 Myb_DNA-binding 9.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1261 K09422 - gmx:100791406 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0487 11 3642134 3643943 Vra7g1261 7 29151457 29152929 PCT