Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1254 ATGCTCACCACCCTCCCTCCCTCCGAACCCCTCGTGGGCAACCCATTCTCCGCCTTTTCTGTAGACTTCTCCGCCTGGGAGGACGACTCCCACCACCTCTTCTCCCCCAAACCCGTCACTTCCAGCTCCGGCTCCGACAAACCGGAGCCCGAGCCAGCTGAACCGGACCATCCCGTGGTCTCGGTGGTGGACGAGCGGAAACTTCGGCGCATGATATCGAACCGCGAATCTGCCCGCAGGTCTCGCATGCGAAAACAGAGACACCTGGAGAACCTTCGGAACCAGTTGAACAAGTGCAGGGTCGAAAACCGGGAACTGAATAACCGGTTGCAGTTCGTCCTGCACCACTGTAACCGCCTCCGAACCGAAAACGAATGGCTCCGGTCCCAGCGAACCCTCCTCCTCCAAAAAGTCGCCAACTTAACCCAAATTTTGATTTTCCAACAATTCCAACAACCCATCTCCCCTGCATGGACATGCAACACTTCGCTCATCCCAATTAATCAAGTTAATTAA 516 0.5562 MLTTLPPSEPLVGNPFSAFSVDFSAWEDDSHHLFSPKPVTSSSGSDKPEPEPAEPDHPVVSVVDERKLRRMISNRESARRSRMRKQRHLENLRNQLNKCRVENRELNNRLQFVLHHCNRLRTENEWLRSQRTLLLQKVANLTQILIFQQFQQPISPAWTCNTSLIPINQVN* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1254 171 PANTHER BZIP TRANSCRIPTION FACTOR 44 30 162 - -
Vra7g1254 171 SMART brlzneu 62 126 IPR004827 GO:0003700|GO:0006355
Vra7g1254 171 MobiDBLite consensus disorder prediction 32 59 - -
Vra7g1254 171 CDD bZIP_plant_GBF1 67 118 IPR045314 GO:0003700|GO:0006355
Vra7g1254 171 Pfam bZIP transcription factor 66 125 IPR004827 GO:0003700|GO:0006355
Vra7g1254 171 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 64 127 IPR004827 GO:0003700|GO:0006355
Vra7g1254 171 Coils Coil 75 109 - -
Vra7g1254 171 Gene3D - 64 116 - -
Vra7g1254 171 SUPERFAMILY Leucine zipper domain 66 118 IPR046347 GO:0003700|GO:0006355
Vra7g1254 171 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 69 84 IPR004827 GO:0003700|GO:0006355
Vra7g1254 171 PANTHER BZIP TRANSCRIPTION FACTOR 30 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1254 Vra-Chr7 29027489 29028876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1254 1 149 bZIP Transcription Factor Family AT3G49760 40.000 8.14e-30 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vra7g1254 bZIP_1 1.3e-07 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1254 - - gmx:100809244 218.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0491 11 3702486 3703453 Vra7g1254 7 29027489 29028876 PCT