Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1245 ATGGATTTTACCTATGGATTCATAGGGTTTCCTTTCGCAAACCTTTCCTCCCACTCCCACCATTCCAATGATTCTGATGAAGAAGAATTGGAAGAAGAGCTATTGGAAAAGGAAGAGGATGAAGATATGGTTGAAGAGGAAGGAGAAACAAAAATTGCTGGTGGTCGAGTTTCGCATGTACGATGTCAGGTGCAAACAAATTGGCTTCATTATTCAAAACAATGTGAAGTAACTAGCGAAGTGATTCACTTGGAGGATTCTGATGAGGCTTTGAAGTTGAATTATGTTCTGTGGGGAGACAGTGATGAAAGTTGTCTATTGAGCTTATTAGAATCTGAAAATGACCAAGTACAGCAACAAACAAAGTCCACAGGACAGCTTCCCAAAACATGGCTGGTTAATGCTCGAGAAGAGGCCATAAATTGGATCCTAAAGGTGCATGCTTATTACAGTTTTAGACCTGAGACAGCTTATCTTTCTGTAAATTACCTCGATCGTTTCCTCTTGTCACGCACCTTGATGCATGATAAAGCATGGCCTCTGCAGCTGTTATCAGTTGCTTGTCTTTCACTAGCAGCTAAAATGGAAGAAACCAAAGTGCCACTTCTTTTGGACCTACAAGTGATCGAGTCTAAGTTCCTCTTTAAGCCCAAAACAGTTCAAAGGATGGAACTTTTGGTTATGGCCAGTCTCAAGTGGCGATTGCGCCCTATAACCCCTTTTGATTTTGTCCATCTTTTCATTGCCAAGCTTTCATGGTCTGCTTCCACATGGGGTGATTTAAGTTTCACCGTTTCTCGTGTCTCAGATGTTATTATCAGAACATGTCTAGTCATGGATTTCTTGGTGTTTTCACCATCCACAATAGCAGCAGCTGCCCTTTTATGGGCAAACAATCAATGTGTAGAAGACACGAAATCAGATTGTTTCCACAAGAATATAAACTTTGAGATGGTGCAGAAATGTTACAAACTAATGAAGCAGAAACAGATAATTCTCCGATCAGAATTTTATTGGCCAAGGAGTCTGCAATTATTGCCCCGAAGTCCGACCTGTGTGCTTGATGGTGCAGCTATGCAAGAAAGCTGCGATGCTTACAAGCCCTGA 1107 0.4146 MDFTYGFIGFPFANLSSHSHHSNDSDEEELEEELLEKEEDEDMVEEEGETKIAGGRVSHVRCQVQTNWLHYSKQCEVTSEVIHLEDSDEALKLNYVLWGDSDESCLLSLLESENDQVQQQTKSTGQLPKTWLVNAREEAINWILKVHAYYSFRPETAYLSVNYLDRFLLSRTLMHDKAWPLQLLSVACLSLAAKMEETKVPLLLDLQVIESKFLFKPKTVQRMELLVMASLKWRLRPITPFDFVHLFIAKLSWSASTWGDLSFTVSRVSDVIIRTCLVMDFLVFSPSTIAAAALLWANNQCVEDTKSDCFHKNINFEMVQKCYKLMKQKQIILRSEFYWPRSLQLLPRSPTCVLDGAAMQESCDAYKP* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1245 368 CDD CYCLIN 136 228 IPR013763 -
Vra7g1245 368 PANTHER CYCLINS 73 359 IPR039361 -
Vra7g1245 368 ProSitePatterns Cyclins signature. 136 167 IPR006671 -
Vra7g1245 368 SMART Cyclin_C_2 238 363 IPR004367 -
Vra7g1245 368 Coils Coil 23 47 - -
Vra7g1245 368 MobiDBLite consensus disorder prediction 26 43 - -
Vra7g1245 368 SUPERFAMILY Cyclin-like 97 235 IPR036915 -
Vra7g1245 368 PANTHER CYCLIN-D1-1-LIKE ISOFORM X1 73 359 - -
Vra7g1245 368 SUPERFAMILY Cyclin-like 220 335 IPR036915 -
Vra7g1245 368 SMART cyclin_7 242 328 IPR013763 -
Vra7g1245 368 SMART cyclin_7 141 229 IPR013763 -
Vra7g1245 368 MobiDBLite consensus disorder prediction 17 43 - -
Vra7g1245 368 Pfam Cyclin, N-terminal domain 110 235 IPR006671 -
Vra7g1245 368 Pfam Cyclin, C-terminal domain 238 328 IPR004367 -
Vra7g1245 368 Gene3D - 108 323 - -
Vra7g1245 368 Gene3D - 119 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1245 Vra-Chr7 28882152 28886798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1245 133 331 Core Cell Cycle Gene Families AT1G70210 46.602 1.18e-55 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1245 K18810 - gmx:100799323 457.603