Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1234 ATGGATACCTTGTTTAGGCTAGTAAGTTTTCAACAGCAACAACACCATCAACCACAACCCGATCCATCCCTCAACTCCACCACCAGCAGAACTTCTAGCAGTTCCAGATCCTCCAGACAAAACTACTACCATTACTCCCACCAAGAAGACGAAGAATGCTTCAACTTTTACATGGATGAAGAAGACTTGTCCTCGTCTTCTTCCAGACACTACTACCCATACCACAACGTATCCACCACTACCACCACAGCCAACACCTTCAGCACCACCACCAACACCGATTACTCCTACTCCTTCTCCCCCACCCCTCCCCTCCCCGACTTCAACTTCCAATTCTCCCCCAACTGGTCCCACAACCTCCTCCTCCAAACCGCACGCGCCTTCGCTGACAACAATAGCACGCGCCTCCACCACCTCCTCTGGATGCTCAACGAACTCAGCTCCCCATACGGCGACACCGATCAAAAGCTCGCCGCGTATTTCCTCCAAGCCCTGTTCAGCCGCGTCACCGATGCGGGAGACCGAACCTACCGAACCTTGGCCTCTGCATCGGAGAAAACATGCTCCTTCGAGTCAACGAGGAAGACGGTGTTGAAATTCCAAGAAGTCAGCCCCTGGACAACTTTCGGACACGTGGCGTCCAACGGCGCCATCTTAGAAGCCTTAGAAGGAAACCCCAAATTGCACATACTTGACATCAGCAACACCTATTGCACTCAATGGCCAACCCTTCTGGAGGCATTGGCAACTCGAACCGACGAAACTCCGCACCTCAGGTTAACCACCGTCGTCACCGGGAGAACCGGTAACTCCGTGCAGCGCGTCATGAAGGAAATCGGAACAAGAATGGAGAAGTTCGCGCGACTCATGGGCGTTCCGTTCAAGTTCAACGTCGTTCATCACGCCGGCGATCTCTCCGACCTCAATTTCTCTCAACTCAACCTCAAAGACGACGAGGCCCTGGCCATCAACTGCGTGAACGCGCTGCATTCGGTTTCCCCGGCGGGGAACGGCCGCGACGCGTTTATATCGTCGCTGCAAGGGTTGCAGCCGAGGATCGTGACGGTGGTGGAGGAGGAGGCGGATTTGGACGTGGGAATCGAGGGCTACGAGTTCGTGAGAGGTTTCGAGGAGTGTTTAAGATGGTTTAGGGTTTACTTCGAGGCGCTGGACGAGAGTTTCGCGAAGACGTGCAACGAGAGGCTGATGCTGGAGCGCGCCGCAGGGAGGGCTGTGGTGGACCTGGTGGCGTGTTCGCCAGCGGATTCCCTGGAGCGTCGGGAGACGGCGGCGCGGTGGGGGACCCGGCTGCATGGGGGAGGGCTAAGCGCGGTGCCGTTCAGCGAAGAGGTTTGCGACGACGTTAGGGCGCTGTTGAGGAGGTACAAGGAGGGTTGGTCGATGGTACCGTGCTCCGACACCGGAATATTCCTTTCGTGGAAGGAAACTCCGGTGGTGTGGGCCAGTGCATGGAGGCCTTAA 1482 0.5634 MDTLFRLVSFQQQQHHQPQPDPSLNSTTSRTSSSSRSSRQNYYHYSHQEDEECFNFYMDEEDLSSSSSRHYYPYHNVSTTTTTANTFSTTTNTDYSYSFSPTPPLPDFNFQFSPNWSHNLLLQTARAFADNNSTRLHHLLWMLNELSSPYGDTDQKLAAYFLQALFSRVTDAGDRTYRTLASASEKTCSFESTRKTVLKFQEVSPWTTFGHVASNGAILEALEGNPKLHILDISNTYCTQWPTLLEALATRTDETPHLRLTTVVTGRTGNSVQRVMKEIGTRMEKFARLMGVPFKFNVVHHAGDLSDLNFSQLNLKDDEALAINCVNALHSVSPAGNGRDAFISSLQGLQPRIVTVVEEEADLDVGIEGYEFVRGFEECLRWFRVYFEALDESFAKTCNERLMLERAAGRAVVDLVACSPADSLERRETAARWGTRLHGGGLSAVPFSEEVCDDVRALLRRYKEGWSMVPCSDTGIFLSWKETPVVWASAWRP* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1234 493 PANTHER PROTEIN SHORT-ROOT 1 492 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
Vra7g1234 493 MobiDBLite consensus disorder prediction 8 42 - -
Vra7g1234 493 Pfam GRAS domain family 119 492 IPR005202 -
Vra7g1234 493 ProSiteProfiles GRAS family profile. 108 492 IPR005202 -
Vra7g1234 493 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 492 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1234 Vra-Chr7 28771484 28773484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1234 1 493 GRAS Transcription Factor Family AT4G37650 58.473 0.0 570
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vra7g1234 GRAS 2.5e-102 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1234 - - gmx:100778524 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0506 11 3818693 3820717 Vra7g1234 7 28771484 28773484 PCT