Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1230 ATGGAGAGTTATTTGCATGAAAATTTTGGAGGAGTGAAGTCCAAAAACACTACTGACGAAGCTCTTCAAAAATGGAGGAAGGTATGTGGGGTGGTAAAGAACCCCAAACGACGCTTTCGTTTCACTGCCAACATCTCTAAACGTTACGAAGCAGCTGCTATGCGTCGTACCAATCAGGAGAAGCTGAGGGTTGCTGTTTTGGTTTCCAAAGCTGCATTTCAATTTATCCAAGGTGTTCAACTAAGCGATTATGTTGTGCCTGATGAAGTTAAAGCTGCTGGTTTCCAAATCTGTGCGGATGAAATGGGGTCTATTGTTGAAGGCCACGACGTAAAGAAGCTTAAGTTTCATGGTGGAGTAAATGGCATTGCAGAAAAGCTCTCAACATCAACCACCACGGGGCTTAGTGGTGATTCTGAATCACGGCGCAGGAGACAAGAGCTTTTTGGAGTCAATAAATTCACTGAAAGTGAAATTCGGAGTTTCTGGGTTTTTGTTTTCGAAGCCGTACAAGACATGACTCTCATGATCCTTGGGGCGTGTGCTGTTGTGTCTCTGATAGTTGGCATATTAACGGAAGGATGGCCCAAAGGTGCTCATGATGGCCTTGGAATTGTTGCGAGTATCTTACTAGTAGTCTTTGTGACAGCAACAAGTGATTATCGCCAATCGTTGCAATTCAAGGACTTAGACAAGGAGAAGAAAAAGATTTCCATTCAGGTTACAAGAAACGGTTATAGGCAGAAAATGTCAATATATAATTTACTACCCGGTGACATTGTGCACCTTGCCATTGGAGACCAAGTTCCCGCGGATGGCTTATTTGTTACAGGATTTTCTGTGTTGATTGATGAGTCAAGTTTAACTGGTGAGAGTGAGCCAGTGATGGTGACTTCCCAAAACCCTTTTCTTCTATCTGGAACCAAGGTCCAAGATGGATCCTGCACCATGTTGGTTACCACTGTCGGGATGAGGACTCAATGGGGCAAGTTGATGGCAACTCTGAGTGAAGGAGGAGATGATGAAACCCCATTGCAAGTTAAACTGAATGGAGTAGCAACCATTATTGGGAAGATAGGCCTATTCTTTGCAGTGGTTACCTTTGCAGTTTTGGTGAAAGGACTCATGGGCCGCAAACTCAAAGAGGGAAGATTCTGGTGGTGGTCAGCAGATGATGCAATGGAGATGTTGGAATTCTTTGCCATTGCGGTTACCATTGTCGTTGTTGCTGTCCCAGAGGGGTTACCCTTAGCCGTGACATTGAGCCTTGCATTTGCAATGAAGAAGATGATGAATGACAAGGCCCTGGTGAGGCATTTGGCAGCTTGTGAAACTATGGGATCAGCCACAACCATATGTAGTGACAAGACTGGGACACTGACAACCAACCGTATGACTGTTGTGAAAACATGCATTTGTATGAAGGTCAAGGAGGTGAGTAATAATTCTAGTTTGTCCTCTGAACTCCCAGGTCCTGCTTTGAAAATGTTGCTTCAGTCAATATTTAGTAACACTGGAGGAGAAGTTGTGGTTAACAAGAAAGGTAAGCGTGAGATCTTGGGGACTCCAACAGAGTCAGCACTGTTGCAGTTTGGCTTATCATTGGGTGGGGATTTTCATGCAGAGAGACAAACGTGTAAGATTGTTAAAGTTGAGCCATTCAACTCTGAGAAGAAAAGAATGGGTGTGGTTTTAGAGATCCCTGGAGGAGCTTTAAGGGCTCATTGTAAAGGTGCTTCCGAAATAATTCTGGCTGCTTGTGACAAGGTGATAAACTCAGATGGTGCTGTTGTCTCCATCGATGAAGAATCGGGTAATTATCTCAAGAGTACAATCAACCAGTTTGCTGGTGAGGCACTAAGAACTCTCTGCCTTGCATATATTGAATTGGGTCCAGACTTCAGAGAGAAGTCTCAGGAGGAATTGTTTGAGCTAATTCCCAAAATTCAGGTTATGGCTCGATCATCACCTCTAGACAAACATACACTAGTGAAACACCTACGTACCACGTTCGGTGAAGTTGTAGCTGTAACTGGTGATGGAACAAATGATGCCCCGGCCCTTCATGAAGCTGACATTGGACTTGCTATGGGAATTGCTGGAACTGAGGTTGCAAAAGAAAGTGCAGATGTCATTATTTTGGATGATAATTTCTCCACAATAGTGACAGTAGCTAAATGGGGGCGTTCAGTTTACATAAATATTCAAAAATTCGTACAGTTCCAGCTCACTGTAAATGTGGTTGCCTTACTAGTGAACTTCACGTCAGCATGCATGACAGGCAGTGCACCCCTCACAGCTGTTCAACTTTTGTGGGTGAACATGATAATGGACACGCTGGGAGCACTTGCACTTGCAACAGAACCTCCAACTGATGATTTGATGAAGCGTGCACCAGTTGGGAGGAGAGGTGACTTCATCAACAATGTCATGTGGAGGAATATCTTAGGACAAGCATTGTATCAGTTTGTGGTGATATGGTTTCTTCAGACAGTAGGTAAATGGGTCTTTTTCCTCAGAGGCCCGAATGCTGAAGTGGTTTTAAACACTCTTATTTTCAACACATTTGTATTCTGTCAGGTTTTCAATGAGGTAAATTCACGTGAGATGGAGGAAATAGATGTTTTTAAAGGCATATGGGAAAATCATGTATTTATAGGTGTCCTCGGCTGCACTGTTTTCTTTCAAATCGTAATAGTTGAGTACTTGGGAACCTTTGCCAACACAACACCTCTCAGTCTGGTACAATGGATCTTCTGCTTAGGGGTTGGATATGGAAGTATGCCACTAGCAGTTCGCTTAAAGCAGATCCCCGTCTGA 2820 0.4365 MESYLHENFGGVKSKNTTDEALQKWRKVCGVVKNPKRRFRFTANISKRYEAAAMRRTNQEKLRVAVLVSKAAFQFIQGVQLSDYVVPDEVKAAGFQICADEMGSIVEGHDVKKLKFHGGVNGIAEKLSTSTTTGLSGDSESRRRRQELFGVNKFTESEIRSFWVFVFEAVQDMTLMILGACAVVSLIVGILTEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNGYRQKMSIYNLLPGDIVHLAIGDQVPADGLFVTGFSVLIDESSLTGESEPVMVTSQNPFLLSGTKVQDGSCTMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFAVLVKGLMGRKLKEGRFWWWSADDAMEMLEFFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNRMTVVKTCICMKVKEVSNNSSLSSELPGPALKMLLQSIFSNTGGEVVVNKKGKREILGTPTESALLQFGLSLGGDFHAERQTCKIVKVEPFNSEKKRMGVVLEIPGGALRAHCKGASEIILAACDKVINSDGAVVSIDEESGNYLKSTINQFAGEALRTLCLAYIELGPDFREKSQEELFELIPKIQVMARSSPLDKHTLVKHLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALLVNFTSACMTGSAPLTAVQLLWVNMIMDTLGALALATEPPTDDLMKRAPVGRRGDFINNVMWRNILGQALYQFVVIWFLQTVGKWVFFLRGPNAEVVLNTLIFNTFVFCQVFNEVNSREMEEIDVFKGIWENHVFIGVLGCTVFFQIVIVEYLGTFANTTPLSLVQWIFCLGVGYGSMPLAVRLKQIPV* 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1230 939 Pfam E1-E2 ATPase 237 431 - -
Vra7g1230 939 Gene3D - 18 77 - -
Vra7g1230 939 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 50 IPR024750 GO:0005516
Vra7g1230 939 SUPERFAMILY Calcium ATPase, transmembrane domain M 117 938 IPR023298 -
Vra7g1230 939 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 649 764 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra7g1230 939 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 386 475 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra7g1230 939 Gene3D - 168 480 - -
Vra7g1230 939 Gene3D - 691 938 - -
Vra7g1230 939 PRINTS Sodium/potassium-transporting ATPase signature 203 223 - -
Vra7g1230 939 PRINTS Sodium/potassium-transporting ATPase signature 446 467 - -
Vra7g1230 939 PRINTS Sodium/potassium-transporting ATPase signature 574 592 - -
Vra7g1230 939 Pfam Cation transporting ATPase, C-terminus 763 932 IPR006068 -
Vra7g1230 939 ProSitePatterns E1-E2 ATPases phosphorylation site. 455 461 IPR018303 -
Vra7g1230 939 PANTHER CATION TRANSPORTING ATPASE 2 630 - -
Vra7g1230 939 PANTHER CATION TRANSPORTING ATPASE 631 938 - -
Vra7g1230 939 SMART Cation_ATPase_N_a_2 115 190 IPR004014 -
Vra7g1230 939 Gene3D - 506 647 IPR023299 GO:0000166
Vra7g1230 939 Gene3D - 212 311 - -
Vra7g1230 939 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 459 634 IPR023299 GO:0000166
Vra7g1230 939 SUPERFAMILY HAD-like 627 726 IPR036412 -
Vra7g1230 939 Pfam Cation transporter/ATPase, N-terminus 117 185 IPR004014 -
Vra7g1230 939 PANTHER CALCIUM-TRANSPORTING ATPASE 2 630 - -
Vra7g1230 939 PANTHER CALCIUM-TRANSPORTING ATPASE 631 938 - -
Vra7g1230 939 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 110 631 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vra7g1230 939 SUPERFAMILY Calcium ATPase, transduction domain A 239 333 IPR008250 -
Vra7g1230 939 Pfam Cation transport ATPase (P-type) 512 590 - -
Vra7g1230 939 PRINTS P-type cation-transporting ATPase superfamily signature 284 298 - -
Vra7g1230 939 PRINTS P-type cation-transporting ATPase superfamily signature 453 467 - -
Vra7g1230 939 PRINTS P-type cation-transporting ATPase superfamily signature 678 697 - -
Vra7g1230 939 PRINTS P-type cation-transporting ATPase superfamily signature 702 714 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1230 Vra-Chr7 28724773 28729353 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1230 1 939 Primary Pumps ATPases AT4G37640 67.586 0.0 1308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1230 K01537 - gmx:100815662 1129.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0513 11 3870461 3875568 Vra7g1230 7 28724773 28729353 PCT