Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1223 ATGAGTTGCAACGGCTGCCGAGTTCTTCGAAAGGGATGTAGCGAGTCCTGTGTGTTGCGTCCTTGTTTGCAGTGGATCGAAACATCCGAAGCTCAAGGCCATGCCACCGTCTTCGTTGCCAAATTCTTTGGCCGCGCTGACCTCATGTCCTTCATTTCCAACGTTCCAGAAAATCAAAGACCTGCTCTGTTTCAGTCTTTGCTGTTCGAAGCATGCGGGAGAACGGTCAACCCCGTCAACGGTGCTGTGGGCCTTCTCTGGACCGGAAACTGGCACGTCTGCCAGGCGGCCGTCGAGACCGTGCTCCGCGGGGGTACGCTCAGGCCCATGCCGGAGCTCATGGGACTCTCTTCTCCCGCTTCCGCCGTCGACGAGACATCGGAAGTTGCATGCTCCGACATTTGGAGAATCCGAGACCCGAACCCGACTTGTGGTTTGGCGAACACCAGATCCCATAACAGAGTCTCCTCCGCCAGCAAACGCAAGCGGTTGGAGGAGCCGGCGAAGCTTCAGGCGGCGCCGAATCTCGATCTCCGGCTGACGCCGATTTTCCTGCAGAAGAAGGTTGAAAACCGGCGGCCGGTGTCGCCGTCGATGACCTCCGAGGAGTCAGGCACGACGACGGCGTGCTTGGAGAGCAAATTCGGGGATCAGTGGGGTTACAGTGGAGACCGGAAAGTTCTCAACCTTTTCATTTGA 699 0.5765 MSCNGCRVLRKGCSESCVLRPCLQWIETSEAQGHATVFVAKFFGRADLMSFISNVPENQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPMPELMGLSSPASAVDETSEVACSDIWRIRDPNPTCGLANTRSHNRVSSASKRKRLEEPAKLQAAPNLDLRLTPIFLQKKVENRRPVSPSMTSEESGTTTACLESKFGDQWGYSGDRKVLNLFI* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1223 232 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 232 - -
Vra7g1223 232 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Vra7g1223 232 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Vra7g1223 232 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1223 Vra-Chr7 28621833 28623176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1223 1 232 AS2 family AT4G37540 57.724 1.97e-85 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vra7g1223 LOB 6.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1223 - - gmx:100816480 365.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1223 7 28621833 28623176 Vra11g0521 11 3963017 3964367 PCT