Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1201 ATGTCTGGGAACACGGAAGAGCAGCCATTGTTGCCGGACTCCTTGCAGGAAGAAGAGGAGCTGCAAGAAACAGCCTACGAATCCTCGGAGAAGATCGTGGTCGTGGGAATCGACGAGTCCGGTAGCGAGGACAATTGGGGGAGAGTGCCTCCTTTCTCCTGGAAGAAGCTATGGCTCTTTACTGGGCCGGGTTTTCTCATGAGCATAGCGTTTCTGGACCCGGGCAACCTCGAGGGAGACCTTCAGGCCGGAGCTATTGCCGGCTACTCCCTGCTGTGGCTTTTGATGTGGGCAACGGCCATGGGCCTCTTGATCCAGCTCCTCTCCGCCCGCCTCGGCGTCGCCACCGGGAAGCACCTCGCTGAACTCTGCAGGGAAGAGTACCCTGCGTGGGCCCGGATAGTGCTTTGGATCATGGCCGAACTCGCTCTCATTGGTTCTGATATTCAGGAGGTTATTGGAAGCGCTATTGCCATCAGGATTCTCAGTCGTGGGGTTGTGCCCCTTTGGGCGGGGGTCGTCATCACTGCTCTTGATTGTTTTATTTTTCTCTTTCTTGAGAACTATGGTGTGAGGACACTGGAAGCTCTTTTTGCTGTTCTCATTGGTGTGATGGCAATCTCGTTCGCGTGGATGTTTGGTGAAGCAAAGCCCAGTGGCAAGGAACTGCTTCTTGGCGTTTTGATTCCAAAACTCAGTTCCAGAACTATACAACAGGCTGTTGGAGTTGTGGGGTGCCTTATTATGCCGCACAATGTGTTCTTGCACTCTGCTCTTGTTCAGTCAAGGCAGGTTGACCGCAGCAAGAAAGGCCGGGTTCAAGAAGCTCTTAATTATTACTCTATAGAGTCCACCCTTGCCCTTGTTGTCTCCTTTATCATAAATATATTTGTCACAACAGTGTTCGCTAAGGGTTTTTATGGTTCTGAACTTGCAAACAGCATTGGTCTTGCAAATGCAGGACAGTATCTTGAGGAGACATATGGGGGTGGACTGTTTCCAATTTTATACATATGGGGTATTGGGTTATTAGCAGCAGGTCAAAGTAGCACTATTACTGGTACTTATGCTGGACAATTCATCATGGGAGGTTTTCTAAATTTGAGATTAAAGAAGTGGATGAGGGCATTGATTACTCGAAGTTGTGCAATAATCCCAACCATGATAGTTGCTCTTTTATTTGACACCTCCGAGGGATCGTTAGATGTTCTGAATGAGTGGCTCAATGTTCTTCAGTCAGTTCAAATCCCCTTTGCACTTATTCCCTTGCTTTATCTGGTGTCAAAGGAGCAAATAATGGGCACTTTCAGAATTGGCTATGTTCTCAAGATTACATCATGGCTTGTGGCTGCTCTGGTGATAGTGATTAATGGCTATCTTTTGACGGAATTCTTTTCCTCCGAAGTTAATGGTCCCTTGTTTGGCGCTGTAGTGGGTGCAATAACTGCTGCATATGTTGCATTCTTACTATACCTTATATGGAGGGCCATTGCTTTTTACCTTGGCAAAGCATAA 1515 0.4772 MSGNTEEQPLLPDSLQEEEELQETAYESSEKIVVVGIDESGSEDNWGRVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATAMGLLIQLLSARLGVATGKHLAELCREEYPAWARIVLWIMAELALIGSDIQEVIGSAIAIRILSRGVVPLWAGVVITALDCFIFLFLENYGVRTLEALFAVLIGVMAISFAWMFGEAKPSGKELLLGVLIPKLSSRTIQQAVGVVGCLIMPHNVFLHSALVQSRQVDRSKKGRVQEALNYYSIESTLALVVSFIINIFVTTVFAKGFYGSELANSIGLANAGQYLEETYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSCAIIPTMIVALLFDTSEGSLDVLNEWLNVLQSVQIPFALIPLLYLVSKEQIMGTFRIGYVLKITSWLVAALVIVINGYLLTEFFSSEVNGPLFGAVVGAITAAYVAFLLYLIWRAIAFYLGKA* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1201 504 Pfam Natural resistance-associated macrophage protein 78 438 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra7g1201 504 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 55 433 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra7g1201 504 PANTHER METAL TRANSPORTER NRAMP3 PROTEIN 15 499 - -
Vra7g1201 504 Hamap Divalent metal cation transporter MntH [mntH]. 43 465 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra7g1201 504 MobiDBLite consensus disorder prediction 1 27 - -
Vra7g1201 504 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 15 499 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra7g1201 504 PRINTS Natural resistance-associated macrophage protein signature 136 162 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra7g1201 504 PRINTS Natural resistance-associated macrophage protein signature 166 185 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra7g1201 504 PRINTS Natural resistance-associated macrophage protein signature 191 212 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra7g1201 504 PRINTS Natural resistance-associated macrophage protein signature 240 263 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra7g1201 504 PRINTS Natural resistance-associated macrophage protein signature 347 366 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra7g1201 504 PRINTS Natural resistance-associated macrophage protein signature 375 392 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra7g1201 504 PRINTS Natural resistance-associated macrophage protein signature 409 428 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1201 Vra-Chr7 28316400 28320477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1201 47 499 Inorganic Solute Cotransporters AT2G23150 81.236 0.0 763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1201 K21398 - gmx:100812381 897.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0541 11 4140675 4144490 Vra7g1201 7 28316400 28320477 PCT