Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1184 ATGGAAGAAAAAATAGACACTGCAGAAAAGAAGGTGCTGGCTGATATTGTAAAATTGGCACAAAAGAGAGGCCTCAGGGGTAAGCTAGGAGACTGGAGAGAATTCTTGGACAGTCATGATAAACAGTTTGGGACCCGTTTGAGTGATCCATCAAAGCGACCCCATGAGTTATTGGCTACATTTCTAAAGTCTTTTTCGAAGGAGGAAGATTTGAAGTTTTTTGACAACATCATGAGACATCATGAAAATCAATACATGTTGGAGCGACTGAAAGATAAATCCCTTGAGTCCCCGGAGCAGGGTTGGATAGTTATAAATGTTAAAACCAAGCCCAAGGTGATGAAGTCCACTACAATGCTCGCTGTTGATTGTGAAATGGTTCTTTGTGAAGATGGGACAGACGAGGTAGTTAAAGTTTGTGTGGTAGACCATAATTTAGAGGTCAAGCTGAATGAATTCGTAAAACCCAACAAAAAAATTGTGGACTACAGAACAGAGATCACTGGTATCTCTTCTCAAGATCTAGAGGCAGTGACTTGCTCCTTGGCTGATGTACAGAAATCCATGAAGAAGTTGTTATCAAAAGGAGCCATATTAGTGGGACACAGTTTGCATAATGATCTACGTGTGCTGAAGCTTGATCATGTCAGAGTGATTGACACTTCCTATATCTTCCAATCCACGGATGGGCCTATGCACAGAAAACCTTCTTTGAATGGTTTATGTCAGGCTGTTTTGGGTCGTGCTGTTCGGGAAAAAGGTGCTCCACATAATTGTCTAGATGATGCATGTGCAGCTATGAACCTCGTTCTTGCAAAGATCAAACATGGTGTTGATAGGGAATTTCCAATTTCACTGCCTCAAGAGCGTGTTCCAGAAAGTGATACCACAAAGCTTTTTCTTCACAAAATACCAAACAATGTAAACACTGAAGCACTGCATACCATTGTTCCTGGAGAATTCAGAACAGAACTGCAGTCTACTAGGAAAGTTCAAGGAAGACATTATTCTGCCTTAGCTGTTTTTAAAAATACACAAGAGGCTGAGGACGCCTATGAAAAAGTCCAAGGAATCCAATTAAAGGATAATCAAGGGCGTCCACAAAAACTTGTAACATTTCTGACAAGTAAAGGCATGCCTGTCACTCTATATGTTCGGAAAATGGTAAGTGATGAACCCACTGTCCAGAATGGCTCTAATAAGAGGGCTTTACAAACGGATGAGGCAGTTGATGTTTCCAAGAAAGCAAAGATAGATAAAAACACTGAAGAGGATGCCCCAAGCTGTGATGCCCATTTAAACGAGATTGAAGCGCTGAATCAACGATTAAAGCAAAGTGAATTGGAGATCGAATCATTGAAGAAAGAGCTGTCACAGAAAGATTTTGAAATATCCGCCTTGCATAAAATGGTGGAATCTTTAAATAAGATAAGATGGAAAAGAGATAAGGCCCTCCAAAAAGTGTAG 1467 0.4049 MEEKIDTAEKKVLADIVKLAQKRGLRGKLGDWREFLDSHDKQFGTRLSDPSKRPHELLATFLKSFSKEEDLKFFDNIMRHHENQYMLERLKDKSLESPEQGWIVINVKTKPKVMKSTTMLAVDCEMVLCEDGTDEVVKVCVVDHNLEVKLNEFVKPNKKIVDYRTEITGISSQDLEAVTCSLADVQKSMKKLLSKGAILVGHSLHNDLRVLKLDHVRVIDTSYIFQSTDGPMHRKPSLNGLCQAVLGRAVREKGAPHNCLDDACAAMNLVLAKIKHGVDREFPISLPQERVPESDTTKLFLHKIPNNVNTEALHTIVPGEFRTELQSTRKVQGRHYSALAVFKNTQEAEDAYEKVQGIQLKDNQGRPQKLVTFLTSKGMPVTLYVRKMVSDEPTVQNGSNKRALQTDEAVDVSKKAKIDKNTEEDAPSCDAHLNEIEALNQRLKQSELEIESLKKELSQKDFEISALHKMVESLNKIRWKRDKALQKV* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1184 488 Gene3D - 114 283 IPR036397 GO:0003676
Vra7g1184 488 PANTHER SMALL RNA DEGRADING NUCLEASE 2 15 412 - -
Vra7g1184 488 Coils Coil 429 463 - -
Vra7g1184 488 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 15 412 - -
Vra7g1184 488 Pfam Exonuclease 121 269 IPR013520 -
Vra7g1184 488 SUPERFAMILY Ribonuclease H-like 119 274 IPR012337 -
Vra7g1184 488 Gene3D - 287 371 IPR012677 -
Vra7g1184 488 CDD REX1_like 120 271 IPR034922 -
Vra7g1184 488 SMART exoiiiendus 118 279 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1184 Vra-Chr7 28007422 28012663 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1184 120 215 C2H2 Transcription Factor Family AT2G48100 37.143 7.80e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1184 K14570 - gmx:100785565 688.723