Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1183 ATGGAAGAAAAAATAGACACTGCAGAAAAGAAGGTGCTGGCTGATATTGTAAAATTGGCACAAAAGAGAGGCCTCAGGGGTAAGCTAGGAGACTGGAGAGAATTCTTGGACAGTCATGATAAACAGTTTGGGACCCGTTTGAGTGATCCATCAAAGCGACCCCATGAGTTATTGGCTACATTTCTAAAGTCTTTTTCGAAGGAGGAAGATTTGAAGTTTTTTGACAACATCATGAGACATCATGAAAATCAATACATGTTGGAGCGACTGAAAGATAAATCCCTTGAGTCCCCGGAGCAGAGGCTAGTTCAAATAACTCTGCAGCATCCGTTATATCCATTGGATTATTCGTCTCCATCAATTGATGAGGGTTGGATAGTTATAAATGTTAAAAACAAGCCCAAGGTGATGAAGTCTACTACAATGCTCGCTGTTGATTGTGAAATGGTTCTTTGTGAAGATGGGACAGACGAGGTAGTTAAAGTTTGTGTGGTAGACCATAATTTAGAGGTCAAGCTGAATGAATTCGTAAAACCCAACAAAAAAATTGTGGACTACAGAACAGAGATCACTGGTATCTCTTCTCAAGATCTAGAGGCAGTGACTTGCTCCTTGGCTGATGTACAGAAATCCATGAAGAAGTTGTTATCAAAAGGAGCCATATTAGTGGGACACAGTTTGCATAATGATCTACGTGTGCTGAAGCTTGATCATGTCAGAGTGATTGACACTTCCTATATCTTCCAATCCACGGATGGGCCTATGCACAGAAAACCTTCTTTGAATGGTTTATGTCAGGCTGTTTTGGGTCGTGCTGTTCGGGAAAAAGGTGCTCCACATAATTGTCTAGATGATGCATGTGCAGCTATGAACCTCGTTCTTGCAAAGATCAAACATGGTGTTGATAGGGAATTTCCAATTTCACTGCCTCAAGAGCGTGTTCCAGAAAGTGATACCACAAAGCTTTTTCTTCACAAAATACCAAACAATGTAAACACTGAAGCACTGCATACCATTGTTCCTGGAGAATTCAGAACAGAACTGCAGTCTACTAGGAAAGTTCAAGGAAGACATTATTCTGCCTTAGCTGTTTTTAAAAATACACAAGAGGCTGAGGACGCCTATGAAAAAGTCCAAGGAATCCAATTAAAGGATAATCAAGGGCGTCCACAAAAACTTGTAACATTTCTGACAAGTAAAGGCATGCCTGTCACTCTATATGTTCGGAAAATGGTAAGTGATGAACCCACTGTCCAGAATGGCTCTAATAAGAGGGCTTTACAAACGGATGAGGCAGTTGATGTTTCCAAGAAAGCAAAGATAGATAAAAACACTGAAGAGGATGCCCCAAGCTGTGATGCCCATTTAAACGAGATTGAAGCGCTGAATCAACGATTAAAGCAAAGTGAATTGGAGATCGAATCATTGAAGAAAGAGCTGTCACAGAAAGATTTTGAAATATCCGCCTTGCATAAAATGGTGGAATCTTTAAATAAGATAAGATGGAAAAGAGATAAGGCCCTCCAAAAAGTGTAG 1536 0.403 MEEKIDTAEKKVLADIVKLAQKRGLRGKLGDWREFLDSHDKQFGTRLSDPSKRPHELLATFLKSFSKEEDLKFFDNIMRHHENQYMLERLKDKSLESPEQRLVQITLQHPLYPLDYSSPSIDEGWIVINVKNKPKVMKSTTMLAVDCEMVLCEDGTDEVVKVCVVDHNLEVKLNEFVKPNKKIVDYRTEITGISSQDLEAVTCSLADVQKSMKKLLSKGAILVGHSLHNDLRVLKLDHVRVIDTSYIFQSTDGPMHRKPSLNGLCQAVLGRAVREKGAPHNCLDDACAAMNLVLAKIKHGVDREFPISLPQERVPESDTTKLFLHKIPNNVNTEALHTIVPGEFRTELQSTRKVQGRHYSALAVFKNTQEAEDAYEKVQGIQLKDNQGRPQKLVTFLTSKGMPVTLYVRKMVSDEPTVQNGSNKRALQTDEAVDVSKKAKIDKNTEEDAPSCDAHLNEIEALNQRLKQSELEIESLKKELSQKDFEISALHKMVESLNKIRWKRDKALQKV* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1183 511 CDD REX1_like 143 294 IPR034922 -
Vra7g1183 511 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 15 435 - -
Vra7g1183 511 SUPERFAMILY Ribonuclease H-like 142 297 IPR012337 -
Vra7g1183 511 Pfam Exonuclease 144 292 IPR013520 -
Vra7g1183 511 Gene3D - 137 306 IPR036397 GO:0003676
Vra7g1183 511 PANTHER SMALL RNA DEGRADING NUCLEASE 2 15 435 - -
Vra7g1183 511 SMART exoiiiendus 141 302 IPR013520 -
Vra7g1183 511 Coils Coil 452 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1183 Vra-Chr7 28007399 28040154 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1183 143 238 C2H2 Transcription Factor Family AT2G48100 37.143 9.12e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1183 K14570 - gmx:100785565 746.117