Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1179 ATGGCCGTGGAGCTCATGACAGGCTACAGAACCACCACTTTCACCACCAAAGCAGAGGAAAATGCCGTCCAGGAAGCCGCCTCCGGTTTGGAGAGCGTCGAGAAGCTCATCAGAATCCTCTCTCAGACTCCCCAACAATACAACTCCTCCAATCAAATAGCTATCGACTGCAAGGCCGTCGCCGACCTCGCAGTTTCCAAGTTCAAAAACGTCATTTCGCTCCTAGGCCCAGGTCCAGGCCCAGCCCCAGCCCCAACCCCAACCCCAACCCCAACCCCAACCGGCCACGCCCGCTTCCGAAGAGCTCCTCTTCCTCCTCCTTCCACACAACCCTCCCAGCCCCCCGTCTTCCACGCCACCCCTCTGCACCAAATCCCCAAAACAGACGGCACCCTCAACGACTCCTCTTCCAAAACCATTTATTTCTCCTACCCCTCCCCCGCCACTTCCTTCATCTCCTCCCTCACCGCCGACGCCCACACAAAACAACCCTCTTCCTCCTCGCCGCCCCCGCCTGCGCCGGGTTCTTTCCACATCACCACTCTCTCCCACGTCTCATCCGCGGGAAAGCCTCCCCTCTCTTCCTCCTCCTCTTTCAAGAGGAAGTGCAGCTCTGAGAACTTGCCTTCTGGAAAGTGCGGTAGCTCCTCTAGCCGCTGTCATTGCTCCAAAAAGAGAAAAATGAGGTTGAAGAAGGTGGTGAGGGTACCGGCTATAAGCTTGAAGATGGCCGATATTCCACCGGATGATTATTCTTGGAGGAAGTATGGACAGAAACCGATCAAAGGATCCCCTCATCCAAGGGGTTACTACAAGTGCAGTAGCGTGAGAGGGTGTCCGGCGCGAAAGCATGTGGAGCGAGCTTTGGATGATCCGGCTATGCTGGTGGTGACCTACGAGGGGGAGCACAGTCACAGTCTCTCCGCGGCTGATGCCACTAACCTTATTCTTGAATCATCTTGA 963 0.5618 MAVELMTGYRTTTFTTKAEENAVQEAASGLESVEKLIRILSQTPQQYNSSNQIAIDCKAVADLAVSKFKNVISLLGPGPGPAPAPTPTPTPTPTGHARFRRAPLPPPSTQPSQPPVFHATPLHQIPKTDGTLNDSSSKTIYFSYPSPATSFISSLTADAHTKQPSSSSPPPPAPGSFHITTLSHVSSAGKPPLSSSSSFKRKCSSENLPSGKCGSSSSRCHCSKKRKMRLKKVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPAMLVVTYEGEHSHSLSAADATNLILESS* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1179 320 Gene3D WRKY domain 234 308 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra7g1179 320 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 15 320 IPR044810 GO:0003700
Vra7g1179 320 SMART WRKY_cls 247 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra7g1179 320 PANTHER WRKY TRANSCRIPTION FACTOR 7-RELATED 15 320 - -
Vra7g1179 320 MobiDBLite consensus disorder prediction 179 218 - -
Vra7g1179 320 Pfam Plant zinc cluster domain 200 245 IPR018872 -
Vra7g1179 320 Pfam WRKY DNA -binding domain 249 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra7g1179 320 MobiDBLite consensus disorder prediction 78 133 - -
Vra7g1179 320 ProSiteProfiles WRKY domain profile. 242 308 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra7g1179 320 MobiDBLite consensus disorder prediction 78 92 - -
Vra7g1179 320 MobiDBLite consensus disorder prediction 157 220 - -
Vra7g1179 320 SUPERFAMILY WRKY DNA-binding domain 244 307 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1179 Vra-Chr7 27970945 27972726 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1179 19 308 WRKY Transcription Factor Family AT2G24570 44.444 1.23e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra7g1179 WRKY 1.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1179 - - gmx:100170685 406.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1179 7 27970945 27972726 Vra11g0559 11 4295457 4297694 PCT