Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1172 ATGGAACAAGGAGAAGGTGGAAGCACCAGGAGGAGAGGGAAAGAGGGTGAGGCCACGCGCTACAAAGGAATCAGGATGAGGAAGTGGGGCAAGTGGGTCGCTGAGATTCGAGAACCCAACAAGCGTTCACGGATTTGGCTCGGCTCCTATTCCACTCCCGTAGCGGCGGCGCGTGCTTATGACACCGCTGTCTTCTATCTTCGGGGGCCCTCCGCCCGCCTCAACTTCCCCGACCTTCTCGCCGTTGAGGGCCCTGCAGCTGCTGCCTCTGACATGTCTGCTGCATCCATCAGGAAGAAGGCCACCGAGGTCGGCGCCAGAGTCGACGCGCTTCACCGCCTGCAACCCCATGTTCCCGTCGCAGGAGAATTTGCCGACCGGGTCGACCTCAATAAGACACCCGAACCTGAAAATTCGGATTGTGACTGGGATGGTGATTAG 441 0.5918 MEQGEGGSTRRRGKEGEATRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDLLAVEGPAAAASDMSAASIRKKATEVGARVDALHRLQPHVPVAGEFADRVDLNKTPEPENSDCDWDGD* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1172 146 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Vra7g1172 146 PRINTS Ethylene responsive element binding protein signature 59 79 IPR001471 GO:0003700|GO:0006355
Vra7g1172 146 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 1 140 - -
Vra7g1172 146 CDD AP2 19 79 IPR001471 GO:0003700|GO:0006355
Vra7g1172 146 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
Vra7g1172 146 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Vra7g1172 146 MobiDBLite consensus disorder prediction 126 146 - -
Vra7g1172 146 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 1 140 - -
Vra7g1172 146 Pfam AP2 domain 19 69 IPR001471 GO:0003700|GO:0006355
Vra7g1172 146 Gene3D AP2/ERF domain 19 78 IPR036955 GO:0003700|GO:0006355
Vra7g1172 146 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1172 Vra-Chr7 27878053 27878976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1172 21 145 AP2-EREBP Transcription Factor Family AT3G50260 63.971 9.17e-54 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra7g1172 AP2 3.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1172 K09286 - gmx:100789373 250.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0565 11 4346076 4347044 Vra7g1172 7 27878053 27878976 PCT