Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1171 ATGTGGGATCTCAATTACTCACCCGATCAGAGGAAGGACGAGGAATCCGAAGGGTGTTCTTCCCTCAAGACTTCCGTCTACGGGGACGATGACAACATCAAAGGCAAAAGGGTTGGATCTGTTTCCAATTCCAGCTCTTCGGCTGTGGTAATCGAGGACGGATCAGAAGAAGAGGAGGAGGAGGACGAGGAGGACGAAGAAGGTGGCAGAAGAAGCATGAAGAAGCGAAGCAGCAAGATTTTCGGGTTCTCTGTGACCGAAGATTGTGAGTCCATGGACAGTGACCACCCACCTGTGACAAGACAGTTTTTTCCGGTGGAGGAGGCTGACGTGGCGGTTGCATCGGGTGGTGGAAGCTCCACCTTCCCCAGAGCTCACTGGGTAGGTGTGAAATTTGTCCAATCAGAAGCACTTGGTGCTGGAAAATCAGTCGAAGTCTCTCAGCCTATGAAGAAGAGTCGCCGAGGACCAAGGTCAAGAAGCTCTCAGTATAGAGGAGTCACCTTTTACAGAAGAACGGGTCGGTGGGAGTCTCATATATGGGATTGTGGAAAACAAGTGTATCTAGGTGGATTTGACACAGCACATGCGGCTGCTCGGGCCTATGATCGTGCGGCCATCAAGTTCCGAGGAGTGGAGGCCGACATAAACTTCAATATTGAAGATTATGAAGACGACCTGAAGCAGATGAGCAATCTTACCAAGGAAGAGTTCGTCCACGTGCTTCGCCGACAAAGCACTGGATTTCCGAGGGGAAGCTCCAAATATAGAGGTGTAACTTTGCACAAGTGTGGAAGATGGGAAGCTCGAATGGGTCAATTTTTAGGGAAAAAGTACGTTTATTTGGGTCTCTTTGACACCGAGATTGAAGCTGCAAAGGCTTATGACAAAGCAGCCATAAAATGCAATGGGAAAGAGGCCGTAACCAATTTTGATCCCAGCATATATGAGAACGAGCTTAACTCCGGTAACGGTGGAGATCACAATCTGGATTTAAGTTTGGGAAGTTCAAGTTCAAAGGGTGGGGGTAACCAAGCGTTGGGGAATCATCATCATCATAATCATCATCATCATGAACAACAGGTGGGAGGTGAATCAAATTGGAGAAATGGGGGAAGCAAAACGAAGCTGGTGAATATACTGCCAAAACCATGTAATAGAGGGAACAAGGACACACAGGGAAGGGATGTGCACGGGGAGAGTGAAGCATTGAGGATGCTAAGTCAAACACACCTTCATTGTCCAGCTTCCAGTGAAATGCAAAGATATGGTCCCTACAGGTCTTCCGGAGGAGAGTCTCAAATGCATCAAAATTTTGCTCCCATTCACCACCCACCAAATTTTCATTTTCCCAGCAGCAGCAGCAGCAGCATTGGAGGCCGTATTGGAAGTGATCTTTCATTGTCAATGGCCGATCAACAACAGTGGCAATCCGGGCCTCCACATTATTTAGCAACTGCTGCAGCATCATCAGGATTCCCACAACAGATAAGACCCTCTTCTCAAGGTTGGCTGCAGAAAAATGGGTTCCACACTCTCATGAGACCCTCATGA 1554 0.4807 MWDLNYSPDQRKDEESEGCSSLKTSVYGDDDNIKGKRVGSVSNSSSSAVVIEDGSEEEEEEDEEDEEGGRRSMKKRSSKIFGFSVTEDCESMDSDHPPVTRQFFPVEEADVAVASGGGSSTFPRAHWVGVKFVQSEALGAGKSVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAAKAYDKAAIKCNGKEAVTNFDPSIYENELNSGNGGDHNLDLSLGSSSSKGGGNQALGNHHHHNHHHHEQQVGGESNWRNGGSKTKLVNILPKPCNRGNKDTQGRDVHGESEALRMLSQTHLHCPASSEMQRYGPYRSSGGESQMHQNFAPIHHPPNFHFPSSSSSSIGGRIGSDLSLSMADQQQWQSGPPHYLATAAASSGFPQQIRPSSQGWLQKNGFHTLMRPS* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1171 517 CDD AP2 254 314 IPR001471 GO:0003700|GO:0006355
Vra7g1171 517 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 515 - -
Vra7g1171 517 Pfam AP2 domain 163 211 IPR001471 GO:0003700|GO:0006355
Vra7g1171 517 Pfam AP2 domain 254 303 IPR001471 GO:0003700|GO:0006355
Vra7g1171 517 MobiDBLite consensus disorder prediction 37 51 - -
Vra7g1171 517 MobiDBLite consensus disorder prediction 427 464 - -
Vra7g1171 517 ProSiteProfiles AP2/ERF domain profile. 163 219 IPR001471 GO:0003700|GO:0006355
Vra7g1171 517 SUPERFAMILY DNA-binding domain 162 220 IPR016177 GO:0003677
Vra7g1171 517 ProSiteProfiles AP2/ERF domain profile. 255 312 IPR001471 GO:0003700|GO:0006355
Vra7g1171 517 MobiDBLite consensus disorder prediction 52 66 - -
Vra7g1171 517 MobiDBLite consensus disorder prediction 1 77 - -
Vra7g1171 517 CDD AP2 163 220 IPR001471 GO:0003700|GO:0006355
Vra7g1171 517 MobiDBLite consensus disorder prediction 448 464 - -
Vra7g1171 517 MobiDBLite consensus disorder prediction 1 19 - -
Vra7g1171 517 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 515 - -
Vra7g1171 517 MobiDBLite consensus disorder prediction 143 162 - -
Vra7g1171 517 PRINTS Ethylene responsive element binding protein signature 256 267 IPR001471 GO:0003700|GO:0006355
Vra7g1171 517 PRINTS Ethylene responsive element binding protein signature 294 314 IPR001471 GO:0003700|GO:0006355
Vra7g1171 517 Gene3D AP2/ERF domain 254 313 IPR036955 GO:0003700|GO:0006355
Vra7g1171 517 Gene3D AP2/ERF domain 162 221 IPR036955 GO:0003700|GO:0006355
Vra7g1171 517 MobiDBLite consensus disorder prediction 327 372 - -
Vra7g1171 517 SMART rav1_2 163 225 IPR001471 GO:0003700|GO:0006355
Vra7g1171 517 SMART rav1_2 255 318 IPR001471 GO:0003700|GO:0006355
Vra7g1171 517 MobiDBLite consensus disorder prediction 327 345 - -
Vra7g1171 517 SUPERFAMILY DNA-binding domain 254 314 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1171 Vra-Chr7 27845424 27849178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1171 1 339 AP2-EREBP Transcription Factor Family AT4G36920 66.387 9.14e-131 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vra7g1171 AP2 5.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1171 K09284 - gmx:100792442 789.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0567 11 4362099 4365540 Vra7g1171 7 27845424 27849178 PCT