Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra7g1162 | ATGCAGCACATGGAGCGTGAGATTTTGGTGGATGTTGATGGAGATGGCTCGCTAGAGCATCCACAAAGATGCACCATCTGTTTGGAAGACTTTGACAAGGGATCGGAAATCGGGAAGATGCAGTTATGTGATCACAAGTTTCACTTTGATTGCATCAAACAGTGGCTCCTGCAGAAGAACCTTTGCCCCGTGTGCAGAAGAGTTGCATTGCAAAGGCATCTGACCAGCCCAAATGTAGAATATGGTTATTTCTTTCTTTAA | 261 | 0.4483 | MQHMEREILVDVDGDGSLEHPQRCTICLEDFDKGSEIGKMQLCDHKFHFDCIKQWLLQKNLCPVCRRVALQRHLTSPNVEYGYFFL* | 87 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra7g1162 | 86 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 70 | IPR013083 | - | |
Vra7g1162 | 86 | Pfam | Ring finger domain | 23 | 66 | IPR001841 | - | |
Vra7g1162 | 86 | SUPERFAMILY | RING/U-box | 18 | 72 | - | - | |
Vra7g1162 | 86 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF165 | 19 | 70 | IPR045191 | GO:0061630 | |
Vra7g1162 | 86 | SMART | ring_2 | 24 | 65 | IPR001841 | - | |
Vra7g1162 | 86 | ProSiteProfiles | Zinc finger RING-type profile. | 24 | 66 | IPR001841 | - | |
Vra7g1162 | 86 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED | 19 | 70 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra7g1162 | Vra-Chr7 | 27713855 | 27715721 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra7g1162 | 24 | 71 | C3H Transcription Factor Family | AT2G15530 | 50.000 | 2.80e-14 | 64.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra7g1162 | - | K10635 | vun:114179757 | 162.54 |