Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1162 ATGCAGCACATGGAGCGTGAGATTTTGGTGGATGTTGATGGAGATGGCTCGCTAGAGCATCCACAAAGATGCACCATCTGTTTGGAAGACTTTGACAAGGGATCGGAAATCGGGAAGATGCAGTTATGTGATCACAAGTTTCACTTTGATTGCATCAAACAGTGGCTCCTGCAGAAGAACCTTTGCCCCGTGTGCAGAAGAGTTGCATTGCAAAGGCATCTGACCAGCCCAAATGTAGAATATGGTTATTTCTTTCTTTAA 261 0.4483 MQHMEREILVDVDGDGSLEHPQRCTICLEDFDKGSEIGKMQLCDHKFHFDCIKQWLLQKNLCPVCRRVALQRHLTSPNVEYGYFFL* 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1162 86 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 70 IPR013083 -
Vra7g1162 86 Pfam Ring finger domain 23 66 IPR001841 -
Vra7g1162 86 SUPERFAMILY RING/U-box 18 72 - -
Vra7g1162 86 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 19 70 IPR045191 GO:0061630
Vra7g1162 86 SMART ring_2 24 65 IPR001841 -
Vra7g1162 86 ProSiteProfiles Zinc finger RING-type profile. 24 66 IPR001841 -
Vra7g1162 86 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED 19 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1162 Vra-Chr7 27713855 27715721 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1162 24 71 C3H Transcription Factor Family AT2G15530 50.000 2.80e-14 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1162 - K10635 vun:114179757 162.54