Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1161 ATGAACCCTCATGTTGAAGGTGGGTCAGCTGGACAAGGTAATGCAAGCAATCAAAATTATTGTAGGCCTCACCTTCCTAGTGAAACACAGGAGGGACTACTTCCCTTATTTCCTCTCTTTGCTACTGAGGAAGCGTTTCCGGAGTCAGAAGTGAATCTCCCTCAACAAGGTACCGACAACATTGGTGCCACAACTGATGTTCCACTTCAGGAAACCCCTAATGTTGTAGCACCGGAATCAAACATTTTCTCTTCAAGGCCCCTTGCTGGAAATCCTCTGGAAAATGTAGACTTGTGTCTGCACGTTGGTTTCAGCCGTCAGGATCCAGCAATATCTTCTGCTGCGCTTCCAAGTTCAAATCTTGCACGTAGCGTGCATGGAAGCGACTCAAACTCAGTAGGCATTCCAAGAAAAAGAGGTTCTGGAGAATTTCATCGGGGTGAAAGTTCAAACATGGGTGAAGGGACAGGAGAGGTCAAAAGACTTGCTACCGAGTCTCAGGTGAGAGCTAACAACAATGTGAACCCGTCACCACAATCACTTTCTGTGGTGCAACAACAGCATCAATTCCTCCGTGGCCGCCATGTTAATCCAAACAATGAAGGGACACCTTTTCTTCCACCCAATACGCCTGATGATGAAAGAAGAGGTTATCATGCTCCGATACCAAGCCAAGCGAACGGAGCCTCATCACATTCCCAACTGTTTCCTCTGCAACCCTCACATTCCGTTCGGCCTCTATCTTTTCTCAGTAGTTCATTCATGTCAAGTTCTTCTGCCCCCAGCGTTAACAACCTAACCGTGAGGAATGCTCCTCTCTCAATATCCTCTCCGTGTCCTCACGCTAGAGTCGATAATATGATTCCATTTTATGAACATAGAAATGACATGTTTGGTCCTGTAGTTACATCCACTTATCGACCAAACGGGCCTTACGTTGATATTGATCGAGATACTACTAGAAGGGCTCTCCTTTATGGTCTCCGTCAGTTCGAACCCCCGGAACCACTGCAATTACTACCTGGAATTATGGGCAATGGTGGCAGAGTTAGTAATGCTGGAGCCAATACGTACCACCCTCTGCGTGATTATGATAGCGCTACAGCTTGGTTTCTTCCACAGGGCTCACGAGGAACGAACCATTCTCCTCCACCAAGGAATTCTGGCACTCAGAACCATCATAGGCCAATACCACAATTTCCTCCTCTGGAATCACTAAGAGAGCTTCCATCTGAGATTGAGCACCCTGTAGTATTTGGGATGCCGCAAGCATTCACGGGACTGAGTCTGGAAACGATAATGCAGTTGATGGAGCGTGAGATTTTCTTGGTTGATGGAGATGACTCAGAAGAAACTAAAGAAAAATGCCCCGTCTGTCTGGAAGAATTTTGCAGGGGAGAGGATATTGGGAAGCTGCATTCGTGTGTTCACAAGTTTCACTTTGATTGCATTAAAGAGTGGCTCATGCAGAGGAATCTTTGCCCCGTCTGCAGAAGAACCGCGTTGGAAAGGCCTAATCACCCAAATCTACTATATATACTTTGA 1545 0.4654 MNPHVEGGSAGQGNASNQNYCRPHLPSETQEGLLPLFPLFATEEAFPESEVNLPQQGTDNIGATTDVPLQETPNVVAPESNIFSSRPLAGNPLENVDLCLHVGFSRQDPAISSAALPSSNLARSVHGSDSNSVGIPRKRGSGEFHRGESSNMGEGTGEVKRLATESQVRANNNVNPSPQSLSVVQQQHQFLRGRHVNPNNEGTPFLPPNTPDDERRGYHAPIPSQANGASSHSQLFPLQPSHSVRPLSFLSSSFMSSSSAPSVNNLTVRNAPLSISSPCPHARVDNMIPFYEHRNDMFGPVVTSTYRPNGPYVDIDRDTTRRALLYGLRQFEPPEPLQLLPGIMGNGGRVSNAGANTYHPLRDYDSATAWFLPQGSRGTNHSPPPRNSGTQNHHRPIPQFPPLESLRELPSEIEHPVVFGMPQAFTGLSLETIMQLMEREIFLVDGDDSEETKEKCPVCLEEFCRGEDIGKLHSCVHKFHFDCIKEWLMQRNLCPVCRRTALERPNHPNLLYIL* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1161 514 MobiDBLite consensus disorder prediction 121 135 - -
Vra7g1161 514 MobiDBLite consensus disorder prediction 7 25 - -
Vra7g1161 514 MobiDBLite consensus disorder prediction 121 157 - -
Vra7g1161 514 CDD RING-H2_PA-TM-RING 456 498 - -
Vra7g1161 514 MobiDBLite consensus disorder prediction 372 395 - -
Vra7g1161 514 MobiDBLite consensus disorder prediction 194 220 - -
Vra7g1161 514 MobiDBLite consensus disorder prediction 372 403 - -
Vra7g1161 514 Pfam Ring finger domain 455 498 IPR001841 -
Vra7g1161 514 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 426 503 IPR045191 GO:0061630
Vra7g1161 514 SMART ring_2 456 497 IPR001841 -
Vra7g1161 514 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 423 502 IPR013083 -
Vra7g1161 514 MobiDBLite consensus disorder prediction 1 27 - -
Vra7g1161 514 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED 426 503 - -
Vra7g1161 514 ProSiteProfiles Zinc finger RING-type profile. 456 498 IPR001841 -
Vra7g1161 514 SUPERFAMILY RING/U-box 455 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1161 Vra-Chr7 27701910 27704751 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1161 426 505 C3H Transcription Factor Family AT2G15530 42.169 7.13e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1161 - K10635 vra:111241966 1011.52