Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1160 ATGGAGCGTCAAACTTTCTTGGCTGTTGATGGAGATGATTCAGAAGAAAATAAAGAAAAATGCTCCATTTGTCTGGAAGAATTTTGCAACGGAGAGGATATTGGGAAGCTGCATTCTTGTGCGCACAAGTTTCACTTTGATTGCATCAAAACTTGGCTCAACCACAAGAACCGTTGCCCCGTCTGCAGAAGAACTGGGTTGGAAACGTCTAATGACCAAAATGTAGGAGGTAAAGCAGCAGATGCAGCTGTTGTTCACGATGAAGGTCACAGTGAATAG 279 0.4337 MERQTFLAVDGDDSEENKEKCSICLEEFCNGEDIGKLHSCAHKFHFDCIKTWLNHKNRCPVCRRTGLETSNDQNVGGKAADAAVVHDEGHSE* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1160 92 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED 12 68 - -
Vra7g1160 92 MobiDBLite consensus disorder prediction 73 92 - -
Vra7g1160 92 Pfam Ring finger domain 20 63 IPR001841 -
Vra7g1160 92 ProSiteProfiles Zinc finger RING-type profile. 21 63 IPR001841 -
Vra7g1160 92 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 81 IPR013083 -
Vra7g1160 92 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 12 68 IPR045191 GO:0061630
Vra7g1160 92 SMART ring_2 21 62 IPR001841 -
Vra7g1160 92 SUPERFAMILY RING/U-box 15 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1160 Vra-Chr7 27674683 27675155 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1160 16 69 C3H Transcription Factor Family AT2G15530 48.148 2.79e-14 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1160 - K17821 vra:111242030 202.986