Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1159 ATGTCTTCTTCCTCCTCCTCCAGCCACGACCAAATCTCCCTTCCCCTTCCTCACACTCTTCTTCCTTCTTCCCTCACAACCCACCAGGGTAACCCCCCACGCAATCCCATCCCCATCTCCATGCTTCACTTCTGCACCTCCAAAACTGCACAACATAATGCACTACGAGATGGGATCTCGCCCTACAACCCTTCTTCTGCTATCGACGTCTCTTCTTCCTCGCTGCCACTCAATATTCACAATGAAACCGATGACTACGACTGCGACAGTGAGGAGTGTGAAGCGTTGGTAGAAGAAGTTCCAATTCCATCCAAGTGCTTTCGTTCTGGGAGTTCATCCAAAAGAAGCAGAGCGGCGGAAGTTCATAACTTGTCTGAAAAGAGGAGGAGGAGTAGGATCAATGAAAAATTGAAGGCTTTGCAAAATCTAATTCCAAATTCGAACAAGACTGATAAGGCTTCGATGCTTGATGAAGCTATTGAATACCTTAAACAGCTTCAGCTCCAAGTACAGATGCTGTCAATGAGAAATGGGTTGAGTTTGCATCCTATGTTCTTTCCAGAAGGTTTGCAACCCCAGCAATTGTCTCAGATGAGAATGGATTCAAGTGAAGAAAACAGATCTATCCCTTCAAACACTACTGCTACTCTCCCTATGCAACAAGAAAACCCCATGCCCTATTCATCCAATATGGCTAACAAACAAATTGTGGCAGATCAGCCATCCATGACCACCCCATCATATATATTCAACTCAGAAACATCTTTTAGACTGGAATCTCATATTTCTGACAATATAAGATCATTTCAACACAGAGGTTTTTCTGAGATATGCAGAGAAGACATATTGCAGCACCATACCAACCCATTAGTTTCTTCTCAAGGCGCATTGGCTACAGCATCAGTTTCCTTTGATATGCAAAAATCTGCAGTTAAAGACAGCAGCTCTTTAGGAAACTGCATCCCTGGAAGTGATCAATCTAGACTGATGTTGAGAAATAGTGAGCCAACATTATTCTAA 1020 0.4343 MSSSSSSSHDQISLPLPHTLLPSSLTTHQGNPPRNPIPISMLHFCTSKTAQHNALRDGISPYNPSSAIDVSSSSLPLNIHNETDDYDCDSEECEALVEEVPIPSKCFRSGSSSKRSRAAEVHNLSEKRRRSRINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMFFPEGLQPQQLSQMRMDSSEENRSIPSNTTATLPMQQENPMPYSSNMANKQIVADQPSMTTPSYIFNSETSFRLESHISDNIRSFQHRGFSEICREDILQHHTNPLVSSQGALATASVSFDMQKSAVKDSSSLGNCIPGSDQSRLMLRNSEPTLF* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1159 339 SMART finulus 123 172 IPR011598 GO:0046983
Vra7g1159 339 MobiDBLite consensus disorder prediction 108 130 - -
Vra7g1159 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 117 166 IPR011598 GO:0046983
Vra7g1159 339 PANTHER TRANSCRIPTION FACTOR SPATULA 3 288 - -
Vra7g1159 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 114 177 IPR036638 GO:0046983
Vra7g1159 339 Coils Coil 156 176 - -
Vra7g1159 339 MobiDBLite consensus disorder prediction 1 37 - -
Vra7g1159 339 Pfam Helix-loop-helix DNA-binding domain 121 167 IPR011598 GO:0046983
Vra7g1159 339 Gene3D - 112 176 IPR036638 GO:0046983
Vra7g1159 339 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 3 288 IPR031066 -
Vra7g1159 339 CDD bHLH_AtPIF_like 118 179 - -
Vra7g1159 339 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1159 Vra-Chr7 27668029 27671981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1159 81 199 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 75.207 7.22e-47 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra7g1159 HLH 1.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1159 - - var:108336909 554.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0574 11 4442252 4445651 Vra7g1159 7 27668029 27671981 PCT